Pseudomonas oryzihabitans RIT370, UM91_RS16890
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCTTTGCCTCTTATTATAGAGAATGTCCAGGCGAGAATGCTTCCTTAAACGTCAACAGAGTTTCTTGTATGAAGTCCGCTAGTGAAAAGCAGTATGTT GTTGCCTATTTGTCGAAAAGCAATGAGTTTTTCCTTGGGGAAGGTGTAGTCGTTGAAGGTATGTTCAATCAAGAAAATACCTCTATCATGCGAAGTGATC CGGGGTTTTTGCTCTATGGTATGAAACTGGATCTGGCGCCCGGAACTTATGTTCTTGATTTAGAGATAGAGGCAGCAGATTGGTCTGCTTATGCTGTAGA TGTGGTTTCCGATTTTGGATTCCACAAGCTTTATCACTCCGACCTTTCGGGGTCCGCCAGCTTTCGCACTACCTTTCAAGTCGATGCGAACAATACCTTT GTAGAGCCGAGATTGATTACGCTTAACAATAATGCAAGTCTTAGGGTTGTCCGGCTTTTAGTTTATAAGAAATAATTGATCTGAGGGGTTTTCATCTCAA
|
|
| DNA Sequence for Gene |
>UM91_RS16890
ATGAAGGTCATCACAAAAACGGACCTGCAACTGGCTTTGGAGGCTTGTAGATCAAGCTTCCTGGCAGCAGGTTTCTTTAGTTTGTTTATAAATATTTTGC TCCTGGCTCCATCTTTTTATATGCTGGAGGTTTATGATAGGGTTGTTAGTAGTCGGAGCGTTACTACGCTTTTAATGCTTACAATCCTGATATCTGTGTT GATGGCGACCTACGGGGCTTTAGAGTGGATTCGTTCTCGCATAATGGTGAGGATATCAACTAAGTTAGACCTGTTGCTTGGCGAGCGCGTATTAGGGGCT AGTTTTAAGCAGTCGCTGTACACCGGTAGTACAGGGACTTCTGCCCAGCCTATGGGAGATTTAACAGGGCTGCGTCAGTTTTTAACCGGCAGTGGTGTTT TTGCCTTTTTTGACGCTCCGTGGATGCCTATATATATCGGCATCATGTTTTTTTTCCATCCGTGGTTTGGGATGTTGACAGTCGTTGGCGCATTAGTAGC AACTGCTCTTGCTTTTGCAAATGAACGCGCTACAGCAAAAAGGCTATCTGAGGCAAATAAAGAGAACAGCGCTGCTTTGAGCTTGGTAGGAATGGCGCTG CGTAATTCTGAAGTCCTGTCGGCCATGGGAATGCTTCCTAACCTGACCAAAAAATGGAAGGTGAGAAATTACAAGACGCTTGCTCTGCAGGGCAGGGCAA GCGAGATGGGTGGAGCGATTTCTAATATATCGCGTACTTGGCGAATACTCCTGCAATCATTTGTGCTTGGACTGGGTGCTTATCTTGTCATCAACAACGA GATCACGCCTGGACTCATGACAGCTGCCTCTCTGCTGATTGGTCGGGCACTCGCGCCTATTGATCAAATGATTGCAAACTGGAAAGGCTTCGTTAATGCA CGTGGACAATATGCTCGATTGAACGAGGTATTGAAGCAGATTCCAGCAGAGCCCGAGCGGATGTCTTTACCTGCTCCGACTGGAGATCTTTCTGTTGAAC AACTGGTGGTTACGCCTCCCGGCGCTCATCTTCCTGTACTCAAAGGGATTAGCTTTCGAGCCCCTCCCGGCGCTTCTGTTGGTGTCCTAGGCGCGAGCGC TGCCGGTAAATCTACCTTGGCACGGGCGCTCCTTGGAATCTGGCCTGCTCAGAGCGGAAAAGTGCGCTTGGATGGGGCAGACATGTTCCACCTTGATCGA GCAGCGGTAGGTCCATACCTCGGTTACCTGCCTCAGGACATCGAGCTTTTCGAGGGTTCTATAGGCGACAATATCGCGCGCTTCGGTGAGGTGGATGCGG CAAAGGTGGTTGAGGCTGCCCAGATCGCGGGTGTCCACGAAATGATCCTCCGCTTGCCCCAAGGCTATGACACCGTCATCGGTGCCCATGGCGGTGCTTT ATCGGGTGGGCAGCGTCAGCGTATCGGACTAGCGCGTGCCATATACGGCGATCCGAAACTGGTCATCCTTGATGAGCCGAACTCCAATCTGGACGACGTC GGTGAGCGCGCGCTGGGCGAGGCTCTTATAAAGCTGAAGCAGAAGGGCACTACGCTCTTCATCATTACCCACAGGGTCAGCGCCCTGGCCTATGTGGATA ACCTTCTGGTACTGAGCGAAGGCCAGATCGTGATGTCCGGAGCCCGTGATCAGGTACTGGCTCAGCTCAAGGCGCAGCAGTCCGGTGGTCCGCAGCCAGT GGCTAATCCAGGTTCGGTTACCCCCTTGCCGCCCAAGCCTGGTAGTGCAGGAGGAGCGCCCGCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAGACGTCTACATGGAAGCCGAGGCCGCGGGCCTGAAGGTCAATGATGCACCTGTGCGTCGGTTGGGCTTCATCATTCTCTTTGCCGTGTTCGGTATTGG CGGCGGCTGGGCAGCACTGGCGCCGCTCAATAGCGCGGCCTTCGCCACAGGCGTGGTGGCGGTAGACAGCTACCGCAAGTCGGTCCAACACCTGGAAGGC GGTATCATCCGCGAGGTGCGGGTGCACGACGGCGACGACGTCAAGGCTGGAGACGTGCTGATCGTTCTGGACAGCACCCAGGCGGGTTCGGAACTGGAGG CGACCCGTGGTCAGCTGATCGCCGCCCAGGCGCAGGAGGCCCGGCTCATCGCCGAGCGTGACGACGCCAATGACATCACCTTTGGCGCGAGTGACTTTCC CACCGCGGATAAGCGGGTCCAAGAGGCGCGCGCCAGTGAACGGCAAATCTTCATAGCAGGCCGCGATGCGCGCCGTGGTGAGATCGACGTTTTGAAGAAT
|
|
| Amino Acid Sequence |
>peptidase
MKVITKTDLQLALEACRSSFLAAGFFSLFINILLLAPSFYMLEVYDRVVSSRSVTTLLMLTILISVLMATYGALEWIRSRIMVRISTKLDLLLGERVLGA SFKQSLYTGSTGTSAQPMGDLTGLRQFLTGSGVFAFFDAPWMPIYIGIMFFFHPWFGMLTVVGALVATALAFANERATAKRLSEANKENSAALSLVGMAL RNSEVLSAMGMLPNLTKKWKVRNYKTLALQGRASEMGGAISNISRTWRILLQSFVLGLGAYLVINNEITPGLMTAASLLIGRALAPIDQMIANWKGFVNA RGQYARLNEVLKQIPAEPERMSLPAPTGDLSVEQLVVTPPGAHLPVLKGISFRAPPGASVGVLGASAAGKSTLARALLGIWPAQSGKVRLDGADMFHLDR AAVGPYLGYLPQDIELFEGSIGDNIARFGEVDAAKVVEAAQIAGVHEMILRLPQGYDTVIGAHGGALSGGQRQRIGLARAIYGDPKLVILDEPNSNLDDV GERALGEALIKLKQKGTTLFIITHRVSALAYVDNLLVLSEGQIVMSGARDQVLAQLKAQQSGGPQPVANPGSVTPLPPKPGSAGGAPA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|