Pseudomonas oryzihabitans RIT370, UM91_RS16890

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.1560.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0030253 protein secretion by the type I secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01842
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0140359 ABC-type transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00664
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.1560.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0030256 type I protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01842
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00664
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 356 549 1.9E-10
MobiDBLite mobidb-lite consensus disorder prediction - - 557 588 -
SUPERFAMILY SSF90123 ABC transporter transmembrane region IPR036640 ABC transporter type 1, transmembrane domain superfamily 16 317 1.31E-42
CDD cd18586 ABC_6TM_PrtD_like IPR047957 Alkaline protease secretion ATP-binding protein AprD-like, 6TM domain 17 307 4.46232E-115
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 347 494 1.8E-26
Pfam PF00664 ABC transporter transmembrane region IPR011527 ABC transporter type 1, transmembrane domain 21 280 1.9E-9
PANTHER PTHR24222 ABC TRANSPORTER B FAMILY IPR039421 Type 1 protein exporter 9 555 4.7E-76
NCBIfam TIGR01842 JCVI: type I secretion system permease/ATPase IPR010128 ATPase, type I secretion system, PrtD-like 13 556 0.0
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily 12 315 3.6E-30
MobiDBLite mobidb-lite consensus disorder prediction - - 570 588 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 320 555 1.12E-63
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 322 559 6.7E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.