Pseudomonas oryzihabitans RIT370, UM91_RS14280

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016779	nucleotidyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF10410	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006269	DNA replication, synthesis of RNA primer	ISM Inferred from Sequence Model Term mapped from: InterPro:PF08278	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003896	DNA primase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.40.1360.10	-	-	-	243	370	5.8E-41
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	611	627	-
FunFam	G3DSA:3.40.1360.10:FF:000002	DNA primase	-	-	243	370	2.6E-54
FunFam	G3DSA:3.90.580.10:FF:000001	DNA primase	-	-	1	101	1.4E-42
Pfam	PF01807	CHC2 zinc finger	IPR002694	Zinc finger, CHC2-type	6	100	2.4E-41
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	94	108	-
Pfam	PF10410	DnaB-helicase binding domain of primase	IPR019475	DNA primase, DnaB-helicase binding domain	373	426	2.2E-10
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	467	487	-
Gene3D	G3DSA:1.20.50.20	DnaG, RNA polymerase domain, helical bundle	-	-	371	427	8.3E-21
Gene3D	G3DSA:1.10.860.10	DNAb Helicase; Chain A	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	492	634	7.3E-37
SMART	SM00766	dnag_dnab_bind_seq8d	IPR013173	DNA primase DnaG, DnaB-binding domain	502	627	4.1E-33
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	456	495	-
PANTHER	PTHR30313	DNA PRIMASE	-	-	1	622	0.0
Gene3D	G3DSA:3.90.580.10	-	IPR036977	DNA Primase, CHC2-type zinc finger	2	102	1.5E-37
SMART	SM00400	primzinc3	IPR002694	Zinc finger, CHC2-type	36	90	9.4E-37
FunFam	G3DSA:3.90.980.10:FF:000001	DNA primase	-	-	110	242	5.1E-48
SUPERFAMILY	SSF57783	Zinc beta-ribbon	-	-	4	101	6.63E-39
Pfam	PF13662	Toprim domain	IPR006171	TOPRIM domain	261	340	1.1E-17
NCBIfam	TIGR01391	JCVI: DNA primase	IPR006295	DNA primase, DnaG	5	420	0.0
Pfam	PF08278	DNA primase DnaG DnaB-binding	IPR013173	DNA primase DnaG, DnaB-binding domain	506	626	9.0E-26
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	94	114	-
SUPERFAMILY	SSF56731	DNA primase core	-	-	116	427	1.44E-108
SUPERFAMILY	SSF117023	DNA primase DnaG, C-terminal domain	-	-	501	629	3.14E-31
PIRSF	PIRSF002811	DnaG	IPR030846	DNA primase DnaG, bacteria	2	630	0.0
Pfam	PF08275	DNA primase catalytic core, N-terminal domain	IPR013264	DNA primase, catalytic core, N-terminal	126	253	1.9E-42
CDD	cd03364	TOPRIM_DnaG_primases	IPR034151	Bacterial DnaG primase, TOPRIM domain	261	342	1.68777E-35
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	611	635	-
Hamap	MF_00974	DNA primase [dnaG].	IPR030846	DNA primase DnaG, bacteria	4	628	30.011301
Gene3D	G3DSA:3.90.980.10	-	IPR037068	DNA primase, catalytic core, N-terminal domain superfamily	113	242	2.4E-47
SMART	SM00493	toprim5	IPR006171	TOPRIM domain	261	332	2.0E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.