Pseudomonas mediterranea CFBP 5447, N005_RS10995 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold33, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACCCCATCATCTGCTTGCCGGGAGAGCAGCCCTGGCGCAGTACCTCGAACAGCACCATGTACCACCAGCTGACGATGAACAGCAGGATGGAGCCCAGG CCGATACCCAGGTCACCGAAAAAAGCGAGGATGCCGAACAGAAAACCCAGGATCAGCCCCCGTATCCCCAGGTCGATGGCAAACGCCAGTGCGCGGGGCA TCAACCCGGCTGGGCGCAGTGGCAGGTCGATGCCTTCGGGTGTCTCGACCTGATACCGCGTGTCCAGTGGCGGGGGCAGCGTAGCGGTCCTTTGCAGTGC TGGTGTCTCGAGCATGGGCAACCTGAGTGATGGGCCGGTTCGAACGTTGATCCCGGCAGATGCTAGCAGCCTTCGTGCGGGCAAACGATACAACTGTGTA TGTCATTTTATGGATCGTGACGTGATTCAATTCCCGGACCACTGGCCGAAGCCGGGTGGGACCCCCTAGACTTCGCCAGTCTTTTGCCCAGGAACAGCCC
|
|
| DNA Sequence for Gene |
>N005_RS10995
|sbcB
GTGACCTCCATCTTCTGGTACGACTACGAAACCACCGGCATCGATCCGCGTTGCGACCGACCCTTGCAGGTGGCGGGCATCCGTACCGATTTCGAACTCA ATGAAATCGACGCACCGGTGAACCTGTATTGCCGGCCGAGCGATGACATCCTGCCCCATCCGGCGGCTTGTGCGATTACCGGTATCACCCCGACGTGCCT GGCTGAAAAAGGCTTGAGCGAAGCCGATTTCATGACCCGTGTGCACCAGCAGCTGGCCGCGCCCGGTACCTGCGGCGCCGGCTACAACACCTTGCGTTTC GACGATGAAATGACCCGCTACAGCCTCTACCGGAATTTCTTCGACCCGTATGCGCGGGAGTGGCAGGGTGGCAACAGCCGTTGGGACTTGATCGATCTGG TGCGCACGGCCTACGCACTGCGCCCCGATGGCATTGCCTGGCCGCAAGAGGACGGTCGGGTCAGCCTCAAGCTGGAGCGCCTGACTGCCGCCAATGGCAT CGACCATGGCCAGGCTCACGACGCGTTGTCGGATGTGCGCGCAACGATTGCCCTGGCTCGCCTGATCCGCCAGAAGCAACCACGGCTCTACGACTGGCTG TTCCAGTTGCGCAGCAAGCAGAAAGTGATGGACCAGATCCGCCTGTTGCAGCCGATGGTGCACATTTCCGGGCGCTTCTCGGCCGCTCGAAACTACATCG GCGTGGTTCTGCCGCTGGCCTGGCATCCGAAGAACCGCAATGCCTTGATTGTTTGCGACCTGCACCTGGATCCCCAGGGGTTGTTGGACCACGATGCGGA CATCTTGCGGCAACGTTTATATACCCGTCGGGACGAACTGCTCGAGGGAGAGTTGCCAGTGCCTCTCAAACTCATTCATATCAACAAATGTCCGGTGGTC GCGCCGCTGTCGGTGCTGCGGGCCGAGGACCGGCAACGTTTGCAACTGGACATGGACGGGCTGCAGCAACGGGCATTGCAGCTAAGTGATGCCCAGCAAG TTTGGCAGGATAAACTTCAGGCTATTTATGGCCGCGAGGATTTCACGGCCAACGAGGACCCGGAGCAACAGTTATACACAGGCTTCCTCGGTGATCGCGA TCGCCGTTTATGTGAACAAGTCCGCATGGCGGATCCGGCGCATTTGGCACAAGAAAGCTGGCCTTTCGATGATGAACGTTTGCCGGAATTATTGTTTCGA TATCGCGCGCGTAACTTTCCAGATACCTTGAATCCGGAAGAGCAGGGGCGCTGGCGGCTGTTCTGTCAGCAACGCCTGTCATCGCCACAGTGGGGCGCGC CCAATACCCTGGAAAGTTTTGATGAGGCGATGGGAGAGTGGCTGGCGCTTTCCACGCCATTGCAGCGAGAGGTGCTCATTGAGTGGCAAGGTTACAGCCA GCAACTGCGCAAACGTTTAAGTCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACAGCGAAGAAGTGAAAAAATCACAGGCATGAAAAACGCCAGCAATGGCTGGCGTTTTTGTGTGTGTAGCGAACGCTGAAACCCGGCGAGGCTTAGCCCA GCAAGGTTGCCCAGCCTTCAACCACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGAGTCTTGTGGTTGCCACCTTTGGTTTCGATGACTTCGCCGTT GTGCGGGTTTTTGTATTGCTTAACTTTGCGAGCGCGTTTGGTGCCGGTAGTTTTCACGGCGCCGCCACGAGGGGCTTTACCCGACTTGGCTTCTGGATCC AGCAGGCCGATGATGTCGCGCAGGGACTTGGAGTATTCGCCCATCAGAGTGCGCAGTTTGCCTTCGAATTCCAATTCTTTTTGCAGTTTGTCGTCTTTGG ACAGGTCGGCCAGACGCTGTTGCAGTTCTTCAATGGCTTGTTTTGTAGCGTTGTATTCAGTGATCAAGGACATGGGGACTACCTTATGTAGGACGCTGCG
|
|
| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGIDPRCDRPLQVAGIRTDFELNEIDAPVNLYCRPSDDILPHPAACAITGITPTCLAEKGLSEADFMTRVHQQLAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDLVRTAYALRPDGIAWPQEDGRVSLKLERLTAANGIDHGQAHDALSDVRATIALARLIRQKQPRLYDWL FQLRSKQKVMDQIRLLQPMVHISGRFSAARNYIGVVLPLAWHPKNRNALIVCDLHLDPQGLLDHDADILRQRLYTRRDELLEGELPVPLKLIHINKCPVV APLSVLRAEDRQRLQLDMDGLQQRALQLSDAQQVWQDKLQAIYGREDFTANEDPEQQLYTGFLGDRDRRLCEQVRMADPAHLAQESWPFDDERLPELLFR YRARNFPDTLNPEEQGRWRLFCQQRLSSPQWGAPNTLESFDEAMGEWLALSTPLQREVLIEWQGYSQQLRKRLSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|