Pseudomonas mediterranea CFBP 5447, N005_RS10995 (sbcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000175 3'-5'-exoribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11046
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004529 exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 311 331 -
FunFam G3DSA:3.30.420.10:FF:000033 Exodeoxyribonuclease I - - 2 193 1.8E-90
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 3 195 0.0049
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 6 185 2.8E-23
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 1 466 1.03E-123
PANTHER PTHR11046 OLIGORIBONUCLEASE, MITOCHONDRIAL IPR022894 Oligoribonuclease 3 428 1.2E-10
PIRSF PIRSF000977 Exodeoxyribonuclease_I IPR023607 Exodeoxyribonuclease I 1 474 0.0
Pfam PF08411 Exonuclease C-terminal IPR013620 Exodeoxyribonuclease I, C-terminal 204 467 7.8E-93
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 2 193 3.8E-66
FunFam G3DSA:3.30.1520.20:FF:000001 Exodeoxyribonuclease I - - 206 344 2.0E-51
Gene3D G3DSA:3.30.1520.20 Exonuclease ExoI, domain 2 IPR038649 Exonuclease I, SH3-like domain superfamily 206 344 1.1E-46
CDD cd06138 ExoI_N - - 5 187 3.00373E-105
Gene3D G3DSA:1.20.1280.70 Exonuclease ExoI, domain 3 - - 351 410 7.0E-25
FunFam G3DSA:1.20.1280.70:FF:000001 Exodeoxyribonuclease I - - 351 411 1.1E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.