Pseudomonas lini DSM 16768, TU81_RS06800
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 2_928492_19.6844, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTAGGTCGCGGCCTACACGCTCGTTCCACCTTTCACACACAATTTACGCACAGGTTTATCCACAGGTAGTACGTTGCAACACCCTCAAAAACGCATTATC TTGTACCTCGGCGCTAAAAAAACCCTACATGTAGGGTTTTAGCTTAAAAGCCCAACCACATTTCAGACCAGAAACTCAAGCGCTTTATTGCCTGTTTATG GTTGAACCAAGCACGATTTTACAAGCCCAAACCGCACGTGCGGATGGCACCGTTTTTTCAGGCCAGAACAGCCAGAACGGTACGGGTGTTGCAGTCAAAA CTGGCACCCCAGAAAGGAATCCGGCTTCGAGCCCAGGCTCGCGGCCAAAGACTTCGGCAAGGAAGCGGCATCATTAGCCTTTTTCCTACTGTCCCGAAGT TGTTATGCCCGACGCCACGTCGGTTGTAGTGCTTCAGGACAGAACGGTGGGCACCGTGATGGTGCCCAAACAAACATAGAGAATGTGGAGACAACCCCCC
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| DNA Sequence for Gene |
>TU81_RS06800
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGGCACCTTGCCGCAGGCCGCCGATTCGAATTCGGATCTGTCCGCCACCGCGCCTGGTCAACTGCGCG TGATCAAGCGTAACGGCACTGTCGTTCCTTACACCGATGACAAAATCACCGTCGCCATCACCAAAGCGTTTCTTGCAGTTGAAGGCGGCACCGCTGCCGC TTCGTCGCGCATTCACGACACCGTTGCTCGCCTGACCGAACAGGTCACCGCGACCTTCAAGCGTCGCATGCCATCGGGCGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGCGAGCAGAAAGTCGCCCGCGACTACGTGATCTACCGCGACGCTCGTTCCAAGGAACGCGCTG TACGCACCCCTGCCGAAGACGCGGTACAGGCTCACCCTTCGATCCGCATCACCCGCGCCGATGGCAGCCTTGCACCTCTGGACATGGGTCGTCTGAACAC CATCGTCACCGAAGCGTGCGAAGGCCTGGCAGAAGTCGACGGCGACCTGATCCAGCGCGAAACCCTGAAGAACCTGTACGACGGCGTGGCCCTGACCGAC GTCAACACTGCCCTGGTGATGACCGCCCGTACGCTGGTCGAGCGTGAGCCGAACTACTCGTTCGTGACCGCCCGCCTGCTGATGGACACCCTGCGTGCCG AAGGCCTGAACTTCCTGGGCGTCGCCGAGAGCGCGACCCACCACGAAATGGTCGACCTGTACGCCAAGGCGCTGCCGGCCTACATCGCCAAAGGTATCGA ATTCGAATTGCTGAACCCGGTTCTGGCGACTTTCGACCTGGAAAAACTCGGCAAGGCAATCAACCACGAACGCGATCAGCAGTTCACGTACCTGGGCCTG CAAACCCTGTACGACCGTTACTTCATCCACAAGGACGGTATCCGCTTCGAACTGCCGCAGATTTTCTTCATGCGCGTGGCCATGGGCCTGGCAATCGAAG AGAAGAACAAAGAAGACCGTGCGATCGAGTTCTACAACCTGTTGTCGTCCTTCGACTACATGTCCTCGACCCCAACCTTGTTCAACGCCGGTACCCTGCG TCCACAGCTGTCGAGCTGCTACCTGACCACCGTGCCGGATGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGTTGTCGAAATTCGCTGGC GGCCTGGGCAACGACTGGACGCCGGTTCGCGCACTGGGTTCGTACATCAAGGGCACCAACGGCAAATCCCAGGGCGTTGTACCGTTCCTGAAAGTAGTGA ACGACACCGCCGTCGCCGTTAACCAGGGTGGCAAGCGCAAAGGCGCTGTGTGTGCCTACCTGGAAACCTGGCACATGGACATCGAGGAGTTCATCGAGCT GCGCAAGAACACCGGTGATGACCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCGGACCTGTTCATGAAGCGTGTCTTCGATGACGGCCCA TGGACCCTGTTCTCGCCATCCGAAGTTCCGGATCTGCACGACCTGACCGGCAAGGCTTTCGAAGAGCGTTACGAGTACTACGAAGCCCTGTCCCAGTACC CGGGCAAGATCAAGCTGTTCAAGACCATTCAGGCCAAAGACCTGTGGCGCAAAATGCTGTCCATGCTGTTTGAAACCGGCCACCCATGGCTGACCTTCAA AGACCCGTGCAACCTGCGCAGCCCGCAGCAGCACGTGGGCGTGGTTCACAGCTCGAACCTGTGCACCGAGATCACCTTGAACACCAACAAGGACGAGATC GCCGTTTGCAACCTGGGTTCGATCAACCTGCCGAACCACATCACCAACGGCAAGCTGGACACCGCCAAGCTGGAACGCACCGTGAACACCGCCGTTCGCA TGCTCGATAACGTTATCGACATCAACTACTACTCGGTGCCGCAAGCGAAGAACTCCAACTTCAAGCACCGTCCGGTCGGTCTGGGCATCATGGGCTTCCA GGACGCTTTGTACCTGCAGCACATCCCTTACGGTTCCGACGCTGCCGTCGAGTTCGCCGACAAGTCGATGGAAGCGGTCAGCTACTACGCGATCCAGGCG TCCTGCGACCTGGCCGACGAGCGCGGCGCTTACGAGACGTTCCAGGGTTCGCTGTGGTCCAAAGGCATCCTGCCGCTGGATTCGCAACAAATCCTGATCG AGCAGCGTGGCCAGAAGTACATCGACGTTGACCTGAACGAATCCCTGGACTGGGCACCGGTTCGTGCCCGCGTGCAGAAAGGCATTCGTAACTCCAACAT CATGGCCATCGCACCGACCGCGACCATCGCCAACATCACTGGCGTGTCGCAGTCGATCGAACCGACCTACCAGAACCTCTACGTGAAATCGAACCTGTCG GGCGAATTCACCGTGATCAACCCGTACCTGGTTCGCGACCTCAAGGCTCGCGGCCTGTGGGACTCGGTCATGATCAACGACCTGAAGTACTACGACGGTT CGGTACAGCAGATCGAGCGCATCCCGCAAGAACTCAAAGAGCTCTACGCAACTGCGTTCGAAGTGGACACCAAGTGGATCGTTGACGCGGCAAGCCGTCG TCAGAAGTGGATCGACCAGGCTCAATCGCTGAACCTGTACATCGCTGGCGCATCGGGCAAGAAGCTGGACGTGACCTACCGCATGGCCTGGTACCGTGGT CTGAAAACCACTTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAGTCGACCATCAACACCGGTAAGCTGAACGCTGTTTCCAGCGGCGGCAACC ACGGTGACGATTCGGTCCTGGCAGCGCCTGCCGGCCCTGCTCCAGTGCCGAAGGCGTGCGCCATCGACGAGCCGGATTGCGAAGCTTGCCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGAGCGGGTGAGCGCGGAAAGGCGCTTACCTCGATAACCCCCGATCAGTCCTCTGGATTGGTCGGGGGTTTTCTTTTGCCTGCTTTAAAATCAAAAGA TCGCAGCCTCGCTACGCTCGACAGCTCCTACATTGACATGCGATCCCTGTAGGAGCTGTCGAGCGTAGCGAGGCTGCGATCTTTTGATCTTGATCTTTAT CTGCCACCCACAAAAAAGCCCCTCTTCCGAGGGGCTCTTTGTGAAGTGCTACCCGCTAACCAGCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGC TCTGGGTGGAGATGGTCTTGGCGTTTGCCTGGTAGTTGCTCTGAGCCTTGATCAGCTCGACCAATTCGTTGGTCAGGTTGACGTTGGACTCTTCCAGGGA GTTGGACACGACCGAACCCAGGGTGCCGGTGGTCGGCGCATCGACACCCGACACGCCCGAGGCGAAGGTTTCTTTCCAGCGTGTGCCGCCGATTGGCTGC
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQGTLPQAADSNSDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDARSKERAVRTPAEDAVQAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLAEVDGDLIQRETLKNLYDGVALTD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLNFLGVAESATHHEMVDLYAKALPAYIAKGIEFELLNPVLATFDLEKLGKAINHERDQQFTYLGL QTLYDRYFIHKDGIRFELPQIFFMRVAMGLAIEEKNKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGP WTLFSPSEVPDLHDLTGKAFEERYEYYEALSQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEI AVCNLGSINLPNHITNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQA SCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLS GEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRG LKTTYYLRALAATSTEKSTINTGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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