Pseudomonas lini DSM 16768, TU81_RS05520
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 2_928492_19.6844, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCCCCAGGGGCAGGCCGGCAATGGCGTAAACGATGGTGAATGCAGTCCCGATGATCCCCAATTGAAAGTCACTGAGGTGCCATTCCATGCGGATCGGC TCGATGATGATCGCCGGGATGGTGCGGTCGAAGAAGTTGAACAGGTTGGCCAGGAACAGCAGGAACAGAATGCGCCAGGCATTCGCCGCTTGGGTCGAGT TCTGCATGGGTCCGTCTCTTTATTGTTATTGGGGCTTCACTGCCAACGCATTCGAGCCCGGAACCGTCAATCTAGTCAGGCTCATCAGCGCTGTCTGTAA TTATTCGTAATGCTGATACCCATCCATCGCAGCCAAATGCGGCCCATGCAACAATTCATTTCCAATTGTTCTAAATGCCATTCCAAAAACATTGGCATTA ATGTGCCACCACCTCTTGCGCTGCGTGCAAGGCCTCTATACTGCAAGCATTCGCCAGCGCGCATGGCGCAGGCCAGGATGATTCAGAGATGGGGCATGCT
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| DNA Sequence for Gene |
>TU81_RS05520
ATGGAGTGGCTTGGTTTGCATTTCATGACCGGGCTACCGGAGAGCGGGCAGGTCATACTCGATTGCACCCATAACCCTTTTCTGGTGTTGCTGGCCTATC TGGTCGCCTGCACAGCCGGCTTCGCCACGCTGGACATGACCGAACGGGTCGGGCATGTGGAGAAATCCGCCTCTCAACGGCTTTGGCGCTGGGTCGGTGC CGGGTGTCTGGCGGGCGGTATCTGGGCCATGCATTTCATCAGCATGCTGGCGTTCCAGGCGCCGATCGAAATCCAGTACCACCTGCCCACTACCCTGCTC TCGCTGTTATTCGCCCTGACCGCCTCATGGTTGGCCATGTACACACTCAGCCATCCTCAGCTGAATTTCTGGCAATACCTGCGGGCCGCGGTATGGATCG GCCTGGGCATCGCAACCATGCATTACGTGGGCATGGCCGCCCTGCGATCGAATGCGATGGCCTACTACCAACCCGTTCTGTTCGTGCTTTCCATTGTGAT CGCCATCGGTGCCAGCCTGGCCGCCCTGTTGATTTCCAGTCACCTGCGCGACGGCGCCGGCGTGCTTCATCAATTGCTCAAATGCACCGCCAGCCTGGTG CTCGGGGCCGGCATCGTCAGCATGCATTTCACCGGCATGGCGGCGTTCAACCTGGTGCTGCCCGCTGGCAGCCTTCAACCGCTGCCCAGCGACAACAATC ACCTGCAACTGGGGCTGACGGTGGCAGTGATGACGCTGCTGATCATCGGCAGCAGCATCAGCGCTGCACTGGCGGACAAGAAGCTGCAACACAAGGAGCA TGACCTGCAGCGGGTCAACGCCCTGCTCAGTCAACTGGATCAGGCACGTATGTCGCTGCAACAGGTGGCGCATTATGACCCCTTGACCAACCTGATCAAC CGCCGGGGCTTCAACCAGATCTTCGCCGAGAAACTCATCGAGAAAACCAACGAAGGCGGCATGCTGGCGGTGATGTTCCTGGACATCGACCACTTCAAGC GGATCAATGACAGCCTCGGCCATGACGCCGGCGACGAATTGCTCAAAGTCCTGGCCAGCCACATCAAAGCCGCGGTGCGCAGCCATGAAGACGTGGTGGC GCGCTTTGGAGGCGACGAATTCTGCATCCTCATCACCCTGTACGACCGTGAAGAAGCGCGGCAAATGGCTCAACGCATCATGCTGAAAATGAAGGAGCCC ATCGAGTTGTCCGGACGGCGCATGGTCATGACCACCAGCATCGGCATCAGCCTGTTTCCAGAAGACGGCAAGACCTGTGAAGAACTGCTGAAAAACGCCG ACCTGGCGCTGTACCAGTCCAAGGATTGCGGTCGTAACGCTCTGCATTTTTTCAGTTCAAACCTGAAAACCCGCGCCACTCTGGAGTTACAACTCGAAGA GGAACTGCGTCATGCCCTGCGCGAAAACATCGGGCTGATGCTGTATTACCAACCGATCTATGACTTGAGAATCGGCCAGGTCACCAAACTTGAAGCGCTG ATTCGCTGGCAACATCCGGTTCACGGATTGCTCACGCCGGATCGGTTCATCGCCATTGCCGAAGCCAATGGCCTGATCGCCGAACTGGACAACTGGGTGC TGCGCAAGGCCTGCGAGGACTTGGGCGAGCTGTCCCGACACGATTGCGAAGAACTCAAAATCGCGGTGAATTGCTCGCCCCTGAACCTGGCGCGAGAAGA ACTGGCCAATGAAATCGAACACGCCCTGCACGCCTTCGGGGTGGCACCACATCGACTGGAACTGGAAGTCACCGAGAATGCGCTGATGGGCAATATCACC AATACCCTGGTGTTGCTGCGGCAGATTCGCGCCCTCGGGGTCTCGTTGTCGATCGATGACTTTGGCACCGGTTATTCATCCCTGGCCTACCTCAGGCGCC TGCCATTAAACACGTTGAAGATCGACCGCTCGTTCATTCAGGACATCCCCAAGGCCACCCAGGACATGGAAATCGTCCAGGCCATTATCGTCATGGCCCA TACCCTGCATTTGCAGGTCGTTACCGAAGGCGTCGAAACTTTCGAGCAGTACGATTTTCTCGAACGCCATGGCTGCGATTTCGTTCAGGGCTACCTGCTC AGCCGCCCGGTGCCGCTGGCCGAGTTGCGTCCGGTGCTGGCCGAAATCAATCAGCGCAAGCACATGCACAACGTCAATCCTTTGAGTCTGGCTCGCGGTA TAGCTGCACTAGCGTCGACGGATCCTTTTCCAGGAACCCCTGCCCCCCATGGAGGCGCATCAGTTGTGCGGCCAATCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGTGTGGCCGAGCCTTGTTCACGGGAGAATTTTACGGCGCTGTCGAGGTCCTTGAGCAGCGTTCGCACGTGCCATTTCACCGGCTCGAAACGGCTTTC GGCCATTTGCGGCGCGAGAATCTGCAACGGTTTTGAATCGGCGAAACCACCGGCCAGCGCTTCGGCGATCAGGCGTGCGTCGACCCCGGAACGCTCGGCC AGGGCCACCACTTCGGCAATGACCAAGGCATTGCAGGCCACGATCATCTGATTACAGGCCTTGGTCACCTGCCCCGCACCGACGGCGCCCATGTGGGTCA CACGCTGGCCAAGGGTCAACAACACCGGCCGCACGCGCGCAAGGTCTGCCGCTTCGCCACCGACCATGATCGCCAGGCTGCCCGCCTCGGCGCCGACCAC CCCGCCGGACACTGGCGCATCGAGCCAACTCATGCCGGTTTTACTCGCCAATGCGCTTGCCATTTCTCGCGTCGCGTTGGGTTCCAGGCTGGAAAAATCC
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MEWLGLHFMTGLPESGQVILDCTHNPFLVLLAYLVACTAGFATLDMTERVGHVEKSASQRLWRWVGAGCLAGGIWAMHFISMLAFQAPIEIQYHLPTTLL SLLFALTASWLAMYTLSHPQLNFWQYLRAAVWIGLGIATMHYVGMAALRSNAMAYYQPVLFVLSIVIAIGASLAALLISSHLRDGAGVLHQLLKCTASLV LGAGIVSMHFTGMAAFNLVLPAGSLQPLPSDNNHLQLGLTVAVMTLLIIGSSISAALADKKLQHKEHDLQRVNALLSQLDQARMSLQQVAHYDPLTNLIN RRGFNQIFAEKLIEKTNEGGMLAVMFLDIDHFKRINDSLGHDAGDELLKVLASHIKAAVRSHEDVVARFGGDEFCILITLYDREEARQMAQRIMLKMKEP IELSGRRMVMTTSIGISLFPEDGKTCEELLKNADLALYQSKDCGRNALHFFSSNLKTRATLELQLEEELRHALRENIGLMLYYQPIYDLRIGQVTKLEAL IRWQHPVHGLLTPDRFIAIAEANGLIAELDNWVLRKACEDLGELSRHDCEELKIAVNCSPLNLAREELANEIEHALHAFGVAPHRLELEVTENALMGNIT NTLVLLRQIRALGVSLSIDDFGTGYSSLAYLRRLPLNTLKIDRSFIQDIPKATQDMEIVQAIIVMAHTLHLQVVTEGVETFEQYDFLERHGCDFVQGYLL SRPVPLAELRPVLAEINQRKHMHNVNPLSLARGIAALASTDPFPGTPAPHGGASVVRPIR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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