Pseudomonas knackmussii B13, PKB_RS23085 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGCCGGTTGGTCGGCCGCGCGGCGGATGCCGATCAGGTTGAGCCCGGCCAGCAGCGGGTAGCAGAGCGCGCCGGCGAAGACGTTCACCACGATCTCCA GGACCTGGGTGCCGGCGTGCGACACCTGGAACAGGCCCAGCAGGCCGAGGACGAGGGCGATCACGAAGCTGATGACGTTGATCGCCACACCGTAGATGAG CACGGCGCCAATCAACGTGCCCTTCATGCCTTTCACCTTGTGCCAGGCTTCGCCGAGCACTTCGCCGATGCGGAAGTCATAGTCGCGGGCGAGGGCTTCT TCGACGCTGAGGGCGCCGGAGTTCACGCGAGGTTCGTGGAGGCTGCTGCCGGGCGTGGCGTAGGGATTGTCGCTGCTGTTCGTCGTCATTTACCTATTCC TTGGTAGTAATCACGTCGCTAACGATAGCCCATTGCCAGCGCTCGCGGGGCGGCAGGGCGCGGGTGATAGACTCCCGCCGCCAGGCCAAGGGAGAGCGCC
|
|
| DNA Sequence for Gene |
>PKB_RS23085
|sbcB
ATGAACGCCAGCATTTTCTGGTACGACTACGAAACCACCGGTATCGATCCGCGCCGCGACCGCCCGCTGCAGGTCGCCGGCATCCGCACCGACGAGGCGC TCAACGAGATCGAGGCGCCGCTGAACTTCTACTGCCGTCCCAGCGACGACATCCTGCCGCATCCGGCGGCCTGCCTGATCACCGGCATCACCCCGCAGCG CCTGGAAGCCGAGGGCCTGGGCGAGGCGGAGTTCATGACCCGGCTGCATGCCGAGCTGGCCCGTCCGGGCACCTGCGTGGCGGGTTACAACACCCTGCGC TTCGACGACGAGGTGACGCGCTACAGCCTCTATCGCAATTTCTTCGATCCCTATGCCCGCGAATGGCAGGGCGGCAACAGCCGCTGGGACCTCATAGACC TCGTGCGCACCACCTTCGCGCTGCGCCCGGAAGGCATCGAGTGGCCGCGCAACGAAGAGGGTGTGGTGACGCTTAAGCTGGAGCGTCTTACCCAGGCCAA TGGCATCGAGCATGGCCAGGCCCACGACGCGCTGTCCGACGTGCGCGCGACCATCGCCCTGGCTCGCCTGGTTCGTGAGCGCCAGCCCAAACTGTACGAC TACCTGTATCGCCTGCGCAGCAAGACGGCGGTGCTCGATCAGGTGCGCCTGTTGCAGCCGCTGGTGCATGTCTCCGGGCGCTTCTCCGCGGCGCGCAATT TCCTTTCGGTGGTGTTGCCGCTGGCCTGGCATCCGCGCAATCGCAATGCGCTGATCGTCTGCGACCTGGGGCTCGATCCGGCGCCCCTGCTCGACCTGGA TGGCGACGCCCTGCGCAGCTGCCTCTACACCCGTCGCAACGAACTGGCAGAAGGCGAACTGCCGGTGCCGCTGAAGCTGGTGCACGTCAATCGCTGCCCC GTGCTGGCGCCACTGAGTGTGTTGCGCGAGGCGGATCGGCAGCGCTTGCAGATTGATCTGGACGGCCAACTGCAGCGCGCCGAGTTGCTGCGCGAGAACA AGTCCGTCTGGCAGGCCAAGCTGGCTTCGATATATGCCGAGGAAAACTTTGCGGCCAGCCAGGATCCGGAACAACAGCTATATGACGGATTTATTGGCGA CCGCGACCGTCGACTCTGCGAAGAGGTGCGTCGGGCGGAGCCTGCGCGGCTCGGCAAAGAGCAATGGCCGTTCGATGATCCGCGCCTGGGTGAGTTGCTG TTCCGCTATCGCGCGAGAAATTTCCCGGAAACTTTGTCGGGACTCGAACAGGAACAATGGCGAGAGTTCTGCCGTTGCCGGCTGAGTCTCGAGGAGTACG GTGCGCCGAACACCCTCGGGAGTTTCGAAGTGGCCCTGGCTGGACAGCTTGAAAATACTGGCGTGCAGGGACAGGCGCTGCTGCAAGAGTGGCAAGCCTA TGCGGCGAACTTGCGCCAGCGTTATGGCTTGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCGCGGGAATATTTATCGCGGCAATAAAAAACGCCAGCCGAGGCTGGCGTTCTTGCTGGAGCGGGCGGCTTAGCCGAGCAGGGTGGCCCAGCTCTCGAC GGTCTCGGCGCCCCACTTGGCTTTCCATTCCTTGAGCGTCTTGTGGTTGCCGCCCTTGGTTTCGATCACTTCGCCGTTGTGCGGGTTCTTGTATTGCTTG ACCTTGCGAGCGCGTTTGGTGCCAGTGCTCTTGGCCGCGCGCGGGGACTTGGTCAGCTTGGCGTCCGGATCGAGCAGCGCAATGATGTCGCGCAGGGACT TGCCATAACCGCCCATCAAAGCCCGGAGTTTCCCTTCGAACTCCAGTTCCTTCTTCAGTTTGTCATCCTGTTCGAGGGATTTCAGACGATCTTGAAGTTC CTTGATGGCTTCTTCGGTGGCGCGGTACTCATTGATCAGCGACATTTGGGGTACCTTATCTTGAGGTTCGGCGTTGGAGGGAAGTTTTACTCTCAATAAT
|
|
| Amino Acid Sequence |
>exonuclease I
MNASIFWYDYETTGIDPRRDRPLQVAGIRTDEALNEIEAPLNFYCRPSDDILPHPAACLITGITPQRLEAEGLGEAEFMTRLHAELARPGTCVAGYNTLR FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDLVRTTFALRPEGIEWPRNEEGVVTLKLERLTQANGIEHGQAHDALSDVRATIALARLVRERQPKLYD YLYRLRSKTAVLDQVRLLQPLVHVSGRFSAARNFLSVVLPLAWHPRNRNALIVCDLGLDPAPLLDLDGDALRSCLYTRRNELAEGELPVPLKLVHVNRCP VLAPLSVLREADRQRLQIDLDGQLQRAELLRENKSVWQAKLASIYAEENFAASQDPEQQLYDGFIGDRDRRLCEEVRRAEPARLGKEQWPFDDPRLGELL FRYRARNFPETLSGLEQEQWREFCRCRLSLEEYGAPNTLGSFEVALAGQLENTGVQGQALLQEWQAYAANLRQRYGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|