Pseudomonas knackmussii B13, PKB_RS23085 (sbcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000175 3'-5'-exoribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11046
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004529 exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pkc03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 313 333 -
Gene3D G3DSA:1.20.1280.70 Exonuclease ExoI, domain 3 - - 353 413 6.1E-25
FunFam G3DSA:1.20.1280.70:FF:000001 Exodeoxyribonuclease I - - 353 413 1.6E-25
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 4 197 8.4E-4
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 3 195 7.2E-69
Pfam PF08411 Exonuclease C-terminal IPR013620 Exodeoxyribonuclease I, C-terminal 206 469 2.8E-91
PIRSF PIRSF000977 Exodeoxyribonuclease_I IPR023607 Exodeoxyribonuclease I 1 476 0.0
Gene3D G3DSA:3.30.1520.20 Exonuclease ExoI, domain 2 IPR038649 Exonuclease I, SH3-like domain superfamily 208 347 7.3E-45
CDD cd06138 ExoI_N - - 6 189 7.52493E-112
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 7 187 4.7E-25
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 5 445 1.79E-118
PANTHER PTHR11046 OLIGORIBONUCLEASE, MITOCHONDRIAL IPR022894 Oligoribonuclease 4 428 7.4E-11
FunFam G3DSA:3.30.420.10:FF:000033 Exodeoxyribonuclease I - - 3 195 5.9E-94
FunFam G3DSA:3.30.1520.20:FF:000001 Exodeoxyribonuclease I - - 208 346 1.3E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.