Pseudomonas knackmussii B13, PKB_RS09650
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGAAGGTCTTGTATGGTTTGAAGAACTTCGAGGGTAAGTCCAAGTTCAAAACTTGGCTTTACAGCATCACATACAACGAATGTATTACCCAGTACCGCAA AGAGCGGCGAAAGCGTCGTCTGCTCGATGCGCTGAGTCTCGATCCGATCGAGGAAGCCTCCGAGGAGAAGGCCCCCAAAGTTGAAGAAAAGGGGGGGCTC GACCGCTGGCTTGTGCATGTCAATCCCATTGATCGGGAAATCCTGGTGCTACGTTTTGTCGCAGAGCTGGAATTCCAGGAGATCGCCGACATCATGCACA TGGGCTTGAGCGCGACGAAAATGCGCTACAAGCGTGCACTCGACCGCCTTCGGGAAAAGTTTTCGGGCGTATCCGAAACATAGTTGGGTAAATGTTGTCT CTCTAATTCGCGAGTTCTGATAAACTTGCGCGCAAGTTGCTTGTCCTGATTTTTGTCGATGGCTTGCAGCTTACTGACCACCAAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>PKB_RS09650
ATGAAACTGAAGAACACTCTGGGCGTCGTTATCGGCTCCTTGATCGCCGCCTCCGCGGCCAACGCTCTCGCTCAAGGCCAGAACTCGGTCGAGGTAGAGG CGTTCGGCAAGCGTTACTTCACCGACAGCACCCGTGACATGAAGAACGGCGACCTGTACGGCGGTTCGGTTGGCTACTTCCTGACCGACGACGTCGAGCT GGCGCTGTCCTACGGCGAGTACCACGACATTCGTGGCACCTACGAGACCGGTAACAAGAAGGTACATGGCAACCTGTCCTCCCTGGACGCCATCTACCAC TTCGGCACCCCGGGTGTCGGCCTGCGTCCGTACGTGTCCGCTGGTATCGGTCACCAGAGCCTGACCAACATCCACGACGCCAACGGCAGCCGTCAGAACC TGACCATGGCCAACATCGGCGCCGGTCTGAAGTACTACTTCACCGACAACTTCTACGCCAAAGCCAGCCTCGACGGCCAGTATGGCCTGGAGCAGCGTGA CAACGGTCACCAGGGCGAGTGGATGGCTGGCGTTGGCGTCGGCATGAACTTCGGCGGCGGCTCCAAGCCGGCCCCGGCTCCTGAGCCGGTTGCTGAAGTC TGCTCCGATGCGGACCACGACGGCGTCTGCGACAACGTCGACAAGTGCCCGAACACCCCGGCCAACGTTACCGTTGACGCCAACGGCTGCCCGGCTGTTG CCGAAGTCGTACGTGTTCAGCTGGACGTGAAGTTCGACTTCGACAAAGCCAAGGTCAAAGAGAACAGCTACGCCGACATCAAGAACCTGGCTGACTTCAT GAAGCAGTACCCGTCCACCTCCACCACCGTTGAAGGCCACACCGACTCCGTCGGCACCGACGCCTACAACCAGAAACTGTCCGAGAAGCGTGCTAACGCC GTTCGCGACGTTCTGGTCAACACCTACGGTGTGGAAGGCGGCCGCGTGAACGCAGTTGGCTACGGCGAGAGCCGTCCGGTTGCTGATAACAACACTGCCG AAGGCCGTGCTGTTAACCGCCGCGTAGAAGCCCAAGTAGAAGCCCAAGCCAAACAGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGGCCTGAGCTTTGAGAAAAACCCGGCCTCGGCCGGGTTTTTCTTTGCCTGCAGAAAAATTCTCAGGCGCTGCGGGCCAGCTCCAGCGCGGTGCTTGCC GCGACTTCGCCGATCACCAGGATGGCCGGGCTGCGCAGGCCGAAGGCCAGGGCGTCGGCCTGCATTCGCGCCAGGCTGCTGCGGCACTCGCGTTGTTGGG GCAGCGAGGCGTTCTCGATCAGCGCGACCGGCATCCCGGCACGCATTCCGCCTGCAAGCAACCCGTCGCGGACTTCGCCCAAGCGCGCCACGCCCATGTA GACCACCAGCGTCGTGCCGCTTTGCGCCAGTGCTGACCAGTTGGGCTCGCTGTCGTCCTGGGTGTGCGCTGTCACGAGGGTCACGCCACGGCTGATGCCG CGAAGCGTGAGCGGAATGCCGCAGTTCGTGGCCGCTGCCAGCCCCGAGGTGATGCCATTGACCAGTTCGCAGCAGACACCTCTGGCCTCCAGCCAGGCGG
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| Amino Acid Sequence |
>porin
MKLKNTLGVVIGSLIAASAANALAQGQNSVEVEAFGKRYFTDSTRDMKNGDLYGGSVGYFLTDDVELALSYGEYHDIRGTYETGNKKVHGNLSSLDAIYH FGTPGVGLRPYVSAGIGHQSLTNIHDANGSRQNLTMANIGAGLKYYFTDNFYAKASLDGQYGLEQRDNGHQGEWMAGVGVGMNFGGGSKPAPAPEPVAEV CSDADHDGVCDNVDKCPNTPANVTVDANGCPAVAEVVRVQLDVKFDFDKAKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSVGTDAYNQKLSEKRANA VRDVLVNTYGVEGGRVNAVGYGESRPVADNNTAEGRAVNRRVEAQVEAQAKQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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