Pseudomonas frederiksbergensis SI8, JZ00_RS00945
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCAGATCCGCGCCTTGCAATTCGAAGTCGACAACGGTGCGATCCGCGCGCCAGTGGCGGGCCAGGTCATGGATTTGTCCATCCATACGGTGGGCGGTG TCGCCCAGGCCGGGCAAACGTTGATGCAGGTGGTGCCGTTGGACGCACCGATGGCGATCACCGCGCGCTTTGATCCGTTGATGGCCAACAAACTCACTCC CGGGCTGCCCGTGCACGTGCATTTCACCGCCCTGCAACGGGTGGATACGCCGACCGTGACCGGCACGGTCACCACCGTGTCGGCGGATCAGTTGATCGAC GAGCAGACCCACCAGCCGTACTTCTCCGCCAAGGTCGAGATTCCCGCCGAGACGGTTGTCTCGTTGCAAAGCGCCGGGCTGCTGGTGCGCCCCGGCATGC TCGCCGACGTCACCGTGGTGACGGGTGAGCGCACCCTGATGAATTACCTGATGAAACCCCTGCGCGAACGCTTGCTGGCTGCCTTCAAAGAGGAATGAGC
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| DNA Sequence for Gene |
>JZ00_RS00945
ATGACCGACCGTTGCCGTTATGGCGTCCGTGTGCTGTTGAGCCTGTGCACCAGTTGGGCGGTGATCGGCCCCGCCTGGGCGGCGCAGGGCGGGTTGAGCC TGACCGCCGCCTACGACGCCTCGCGGCTCAATGACCCAACCTTGCAGACCGCGACCCACGCCTACGACGCGTCACGACAGGAGGAGGCGATCGGGCGTGG CGGGCTTTATCCGCAAGTGTCGCTGTCATCGCGTTATGGCTATGGCGGGCGTACGGATGGCGGCGATGACAGCAGTTATGTGAACAGCAACGATTACCAG GCGAACAGCGTGACCCTGGCGGCACAACAACCCCTTTACGATAAGGGGCGCTGGGCGGCGTACCAGGAAGGCAAGGCGCGGGGCGTGCTTGGCAGCCAGC AGTTCGATGTGGCCGGCCAAGCCTTGTTCGATCGCGTCGCCAAGGGCTACTTCGATGTCGCGCGCGCCGAGAATGAACTCAAGTTGATTGCCCAGCAAAA AACCGCCATCCGTGGCTTGGTCGTGCAGAGCAAAAAGCTCTATGAGGGCGGCCAGGGCGCGATTACCGATATCGACGAGGCCCAGGCCCGGCTCGATCTG GTGGAGGCCCAGGAAACCGAAGCCCAGGCGCGCCGCGTGGCTGCGTTGCGGGCGTTGTCGGGGCGTACGAGCGTGCCCATCGACGACATCCAGCCGATGC GCGAAGAGTTGCCCACCGGCAGCCCCATCCCGCCTGAGCAGGATTTGCCTTACTGGACGGCAATCGCTCGCGAGGCCAGCCCCGAATTGGCGGCACGGCT GGCGGCGGTGAAAGTTGCCGAGGCCCAGGCCGACAGCCAGCGCGCCGGGCATTATCCGACGTTGTCGCTGACCACCCAGTTGACCCGTCGGGAAACCCGC CAGTACCAGGAGCTCGATCCGCGCCAGGACACCTATTACGTTGGCGTTCAACTGGACATTCCGTTGTACCGCGGCGGCGCGGTCCGCGCCTCGGTAGCCA AGGCCGAGGCACAGTTGGCTGGCGCCCAGTCGGACTATGACGTGCAGCGCCAGGAACTGGCGGAATCAATCGAGACCGATTACCTGGGCGTGGTCGCGGG GTTCGCCAAGAGCAAGGCGATGCTACGGGCGGTGGAGTCCAACCAGCGGGCGCTGACCTCCACCGAGAAGGGGTTCCAGGGCGGCGTGCGTTCGACCGTC GATATCCTCGACGCCCAGCAACGCTTGTTCCAGGCGCGCCGGGACCTGCTCGATACCAAGCTCGACATGCTGCAAAGCTATGTAAGCCTGCACACCCACA CCGGCCAGATGAACCGTGCAGTGCTGGAGCAGGTGCAAAGCCTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTGAAGTGTGCAATGTTGTTGTGGCGAGGGAGCAACCTCCCTCGCCACAAAGGCAGGTGGAACACAAGGGGCTGCATAGCAGCCCCAAAAAGCTCAATC AGGCAGTGAAGTCACTGGCATGCAGCTCCTTGACGCCCACCAGTTGCACTTCGAACTCGGCGGTGGCGTCCGCGTCGACGCTGCCGTAGAGGATGCCGTC GACAAAGCGCAGCTGGCCGGTGGCGTTGGCGTCGAAGGCGTTGCTGCCGATAAAGGTGAACGCATCGAGGGTGGCGGTCAGCGGGTTGGCGTCCAGGCCG GTGAAGTCCAGCTTGTCCAGCTCGGTGCTCTTGAAGCCGTTGATCACGTCCCGCGCCGCGCCGACGTCCATGTCCGACAGTGCGCCAAACGCGTAGGTGT CCGCGCCGGTGCCGCCGGTGAGGTTATCGGTGCCGGCGCCGCCGATCAGCCGGTCATCGCCGGAGCCGCCCACCAGGGTGTCGTTGCCCGCGCCGCCGTT
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| Amino Acid Sequence |
>ABC transporter
MTDRCRYGVRVLLSLCTSWAVIGPAWAAQGGLSLTAAYDASRLNDPTLQTATHAYDASRQEEAIGRGGLYPQVSLSSRYGYGGRTDGGDDSSYVNSNDYQ ANSVTLAAQQPLYDKGRWAAYQEGKARGVLGSQQFDVAGQALFDRVAKGYFDVARAENELKLIAQQKTAIRGLVVQSKKLYEGGQGAITDIDEAQARLDL VEAQETEAQARRVAALRALSGRTSVPIDDIQPMREELPTGSPIPPEQDLPYWTAIAREASPELAARLAAVKVAEAQADSQRAGHYPTLSLTTQLTRRETR QYQELDPRQDTYYVGVQLDIPLYRGGAVRASVAKAEAQLAGAQSDYDVQRQELAESIETDYLGVVAGFAKSKAMLRAVESNQRALTSTEKGFQGGVRSTV DILDAQQRLFQARRDLLDTKLDMLQSYVSLHTHTGQMNRAVLEQVQSLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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