Pseudomonas frederiksbergensis SI8, JZ00_RS00945

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01844
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56954 Outer membrane efflux proteins (OEP) - - 8 437 1.44E-77
Coils Coil Coil - - 332 352 -
NCBIfam TIGR01844 JCVI: TolC family outer membrane protein IPR010130 Type I secretion outer membrane protein, TolC 32 448 3.9E-85
PANTHER PTHR30026 OUTER MEMBRANE PROTEIN TOLC - - 11 445 1.1E-70
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 254 430 5.5E-29
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 36 220 2.3E-21
Gene3D G3DSA:1.20.1600.10 Outer membrane efflux proteins (OEP) - - 33 449 8.5E-76
Coils Coil Coil - - 191 211 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.