Pseudomonas fluorescens AU5633, AA066_RS08805

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU5633 Contig_8, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AAAGCTTTTATGGGCACATTCTGACGTTTCGCGGTGTTGGCCTGGGCGCCCGCGAAGAAGGTGTGCGGCTGTTGCGTCTGGCGGCGCTCGCCGGCGATGG CAAAGCGGCTTATCAGGTCGGCGTGATCAGCCTGGCCGGTACTCCGAGCAAAGCGCCGGATCCGACAGAAGCGGCGCGCTGGTGGACGCTGGCCGCCAAG GCCGGCCACCCGTTGGCCGAGCTCAAACTCCAAGAGTTGAGCGCTCGGGATTAAACCCAGTAAATCATTTTGTATCGACCGATAAACGTGGCGTGAGGGA AACCTCACGCCACGTTTGCGTTTATCGCCATACGTTTTGTAGTAATCAGTCCTTTGCAGATTTGTCCTACAGCAAAAGCCTACTCGCCTGACTTCTTTCC TGATTGATCCCCCGCAAAGTCCCCGCGCCTAATTTTTGCGCGAGGGAACGCTCATGTTTGACCCGGTTTTTCATTCCACCCCGCATCGTTGCGTGCGCTG
DNA Sequence for Gene
>AA066_RS08805
ATGGAAGCCGTCAGCCGTATCGAGCAGGAACTCGACAGCTTTCCCGACACCCTCAGCCTCTATCGCCAGCAGCTTGAACACTGGTTCAGCAGCGCGGCGG ATCAGGTCAGCCACGCGGCGGATCTGCCGTCGCTGATGGGCATGGAGCGGATCATCCGTTTCGGTGATCGCATCACCGCTGTCAGCACAGGAGACAGTGA GTTTGCCTCCGGCGTCGTGCAGTGCCCGAAAAGCGGGGTGCTGACGATCGAGAGCAAATTCGAGTCGGTGTACGACATTCCGCTGGGCGACATCGTGGTC GATGTGGTGGCGGTGGATGATGGCCAAATCTTCCCCGTCGGACTTGATGCGCAAGGCCGGGGAACATTCACCGGGACGCCCGGCAAGTTCTATCGCGTGC AGGTGCACAGCGAGGTTACCTCGGAGCAGATCGAGGCGCTGTTCAAGTCCTACGACGGCTTGACCGGTAATCTGGAGGGCTGGCTGCGCAGCGAGTGGCA GGGGTTCAAGCCGCAGTGGTCGCAGTCGGTGGCGACAGCGGCAGGCAACGGCATGCTCGCCGGGAGCTGGGCGGCGATCGAGGGGGTGTGGGACAGCCTC GGCATGCTGTCGGAAATTCTGCAGGATCCAGGCGCGTTTGCCGATCGCCTTGGAAGCGGCGCGGCCGATCTGATCCGCCTCGCAGAATCAGCTCCGGATG TCATGCAAAAGCTGCAGTTGCTGGTCAGCGATGAGGCGGCGCTGTGTTTGCTGCTGCGCAGTGCGAGTCTCTGGCTGGAGATGCTGCCGCCCAGCCAGAT CGCCGGCAAAACCGCTGAAATGGCGTCGATGATGATCGTGCAGGTGCTGCTCGATGTGCTGATCGGCGTTGTGTTGACATTCGTCGGGGCTGGCGCAGGG ATCGCTTATCTGACGCTACGTCTGGCGGATCGCGCCGCCCAGCTGCTCACGGTTGTGAAACGTCTGGTCAAGGCGATGTTCGGCATCGTCAACACGTTCA TCCATTACGTCGACCAGTACAAAACTGTCGCCGCGCGGGGCATTGCCGCCGGCGTTAAAAAGGGCCGCATGCAGTTGCGCTGGGATGCGAAGCGCAATGC CGCCCTGAAGAAAAACGAGCATCACGACGACTCGCCGGAACAAGCGAAAAACCCCAACGGCGACAGCGCCGATTGCGCGCCGCTGACCTGCACCAACGGC TGCCCGGTGTCGATGGTCACCGGCGAAGAACTGCTGACCCTGACCGATGGCACGCTCGATGGCTTGCTGCCGTTCGAGTTCACCCGGTTGTACCGCACCA GCGCGGTGGAGATCGATGTCGGGCTGGGGTTTGGCTGGAGCCATTCGCTGGCGCATCGGCTGGAGTTCGATGGCGAGGCGGTGGTCTGGGTCGATCACGA GAACCGGCGCACGCGGTTCCCATTGCCCAGTGTTGAACGGCCGCAGATCCACAACAGCCTGTCACGGGCGGCGATTTTTCTCGGCGATGAGCCCGAGGAA CTGATCCTCGCGCTGGCGGGGGATGCGGCGCGGTTTTATCACTTTCGTGCCGGGCGACTGACGGCGGTCAGTGATGCATATGGCAATCGTCTGACGGTGC ATCGCGATCATTCCGAGCGTGTGCAGCGTCTGGATAGCGGGGCCGGGCGCTCGCTGCTGTTGCGCTACGACCGGGCGCATCTGGTGGCAGTTGATTACCA GGTGTTTGAGGCGGGTGGCTGGCGCACCGAGCAAACGCTGGTCAGTTATTGCTACGACGCCCGTCAGCGATTGTTGGCCGCGACCAATGCCGTCGGGGAC AGCGAGCGTTACGACTACGACGATCAGCACGTCATCCTGCAGCGGCAACTGAGCGGCGGCGCGAGCTTTTTCTGGGAGTGGGAGCGTTCCGGCAAAGCCG CGCGTTGCGTGCGCCATTGGGCCTCGTTCGCGCAGATGAATACGCGGTATGTCTGGGACGACAGCGACCGCGTCACGGTGCATTACGTTGATGGCACCGA GGAAACCTACGTCCACGATGACAGCGCACGGCTGGTGCGCAAGGTCGAGGCCGATGGCGGTGAGCATCTCAAGGCGTATGACGCTGCGGGCCGGTTGATC GCCGAGCAGGATCCGCTGGGTGCGGTCACCGAATACCGCTACGACGACGTCGGACGGCTGATCGCGCTGCTTCCGCCGGACAATGAGCCAACGTCCTACG AGTATCGCAACGGTTTCCTGCACAGCCGTTCTCGTGGTGACGCGGTCTGGACGTATCGGCGCAACGCCGAAGGGGATGTCACCGAGGCGGTCGATCCTGA CGGCCAGGTCACCCATTACTACTACGACACGCGCGGGCAGTTGCTGTCGATCCGCTATCCGGACAGCAGCCGGCACAAGTTGTCGTGGAATGACCTCGGC CAACTGATCGAGGAAACCCTGCCTGACGGCGGTGTACGGCGTTTTTCCTACGATACGCTGGGGCGACGGACGACCACTTGCGACGAACACGGTGCCGTTA CTCGCCAGCAGTGGGATGCCATTGGCCGACTGGTTCAGATGACTTTGCCTACAGGCGCCACCCGCGCCTACAGCTACGGCGCGTACGGCCAGGTCACGGC CGAGCGCGACGAGCTCGGGCGCATCACCCGTTACGAGTATGACGACGACCTGCATCTGGTCTCGCGCAGGATCAATCCCGACGGCACGCGGGTGCAGTAT CGCTACGACCATGCGCAACTGCTGCTGACTGAAATCGAGAACGAATCCGGCGAAAAGTACCGACTGGACTACACGCCTAGCGGATTGATCCGACAGGAAA CCGGCTTCGACGGCCGGCGCACCGCATACGCCTACGACCGTAACGGGCACCTGCTGGAGAAGACCGAGTTCGGCGACGACGGCTCGACGCTGGTCACTGC CTACGCGCGTGATGCGGCCGGGCGTCTGCTGCTGAAAACCCTGCCCGACGGAGTTCAGGTCGAGTATCGCTATGACCGCCTGGGCCGGTTGATCGGCGTC GATGACGGCCAGCAACATCCACTGGCCTTTGAATACGACCTGCAGGACCGACTGATCACCGAGCATCAGGGCTGGGGCACCCTGCGTTATGCCTATGACG CCTGCGGTCAGCTCAAACGCCAGCGTCTGCCGGACAACAGCAAGCTCGACTATCACTACGCCAAGGGCGGTGCGCTGACCGCCATCGACCTTAATGGCAC ACGGCTGACCAGCCACATCTATCAATCGGGTCGTGAACAACAACGCCAGCAAGGCCTGCTGCTCAGCGAATACGCCTATGACGACCAGGGCCGTTTGCTG GCCCACGCTGTAGGTCATCAGCACGCTTCGCTGTATCGCCGCGATTATGCCTACAGCGCCAACGGCAATCTGGAACACATTGCCGACAGCCGTCACGGTC AGCGCACCTACGGCTACGACGCCCTCGACCGCTTGATCCGCGTACGTCATTCGCGCGACGAACTGCCGGAAGCCTTCGCCCACAACCCGGCCGGCAACCT GCTGATGCAGGACCGTCCCGGCCCCACGCGGATCAAGGGCAACCGCCTGCTGATGCAGGGCGACCGGCATTACGACTATGACGCCTTCGGCAACCTGATC CGCGAGCGTCGCGGCCGCGATCAACTGCTGATCACCGAATACCGCTACGACTGCCAGCACCGCCTGATCGGCCTGACCCGCCCGGACGGCCAAACCGCGA CCTACCAATATGACGCTTTTGGTCGACGCATCCGCAAGACCGTCGACGGCCACAGCACCGAGTTCTTCTGGCAAGGCGACCATCTCGTCGCCGAAAGCAG CAAGGTCCAATACCGCAGCTACGTCTACGAACCCGGCACCTTCCGCCCGCTGGCGCTGCTCGACGGTAAAGGCGCGAAACGCGCCTGCCCGTTCTACTAC CAGCTCGACCACCTCGGCACCCCGCAGGAACTGACCGATTACAGCGGCGAAATCGTCTGGTCGGCGCAATACGACGCCTACGGCAAAGTCGCCGCGATCA CCCTGGCGGGCGAGGACTACCTGGACCAGCCACTGCGCTTTCAGGGGCAGTATTTCGACGCGGAGAGTGGGCTGCATTACAACCGGCATCGGTTTTACGA CCCGAGGTTGGGACGGTATCTGACGCCGGATCCGATCAAGTTGGCGGGTGGACTCAACCAATACCAGTACGTGCCGAATCCGACGGGGTGGGTGGATCCG TTGGGGTTGAGCTGCAGTTGTCCGCCGACGAATCCGCGTCGCCCGATGCGATACGAGGCAGGCCGCGTAGTTGTTGAAGAGGGCTCTCCTTCGCTGCCAA AGATGACAACGCAGGAGCGGCGGGCGAGGCTTGATGAGGTGGCTGAGGAGAACGCGAAGCGTCGGGTATATGAATATGAAAATCTTTATGGCATGCACAC TGTGAAAAAACATAGTTCGGAAATATCCGATCCAGCACTGAAGCAACGTGGCATCAATGGAGCAGATCCTCATACAGGTATAGTCCCAAGAGGTGCCAGA GGAAATCTTAGCTCTCAGTTCCATAACTGGCGAATGCATTTGGGTGCACTGAATAAAGCGATGACGAAGGACAAAAATGGCCGAATAATGCACACAGGGA AGGACCAGAACCATGCTCCAATAGTTAGATTGGAACTACCCGGTGCGGGGCGCGGATATAGACCGAATAAACGAGATGAGCAAAATCCAACTCTTAATGA GAATTTGAACTGGTTTGAAGTGAAATTTGATCAGATAAATACGCAGGAACCATTCACGGGCTTCCCGGCGGAGGGTAGGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGTTGAAGGATCCGTTTTTGAATGAGCCGTTTGAACCGAGTTTGACTTGGTTTGTTAGTAGGTTTGATGTTTATGATCGAGAGGAAACTCGAGGCGTAGA GCTTGGTGTTTATAATCCGGATGATCCAGTTGATAGGGAGGTTCTTATAAGAAAATATTGTTTGGTGTTGCCTTATCTTTCTTATAGGCATAAATGCGTA CTATTTGAATTTCTAGAGCGAGCGCTCGAAGATCCGAAATTTGACTTTCAAAGACCCTTTGAAATCGATGAGTGTGAAGCGAATAGCTGGCCACGGGAGG AATGGTATTCCTTAAACGAACCGCGCAGTTTTTTTCAGAGTGTCTATCAATTAGCACAGGAAGTTTGGAAAGAAGATCTCTCAAGGGCTGCAGGCGAAGA AAAAACTACGTGGTGATGTTTTTGATAATGTGCGCGAAAGCTTTGTGAAATTGGCTCGGGGTTAGATATGAGCTGTATGGACTGACCCCTTCGCGAGCAA
Amino Acid Sequence
>type IV secretion protein Rhs
MEAVSRIEQELDSFPDTLSLYRQQLEHWFSSAADQVSHAADLPSLMGMERIIRFGDRITAVSTGDSEFASGVVQCPKSGVLTIESKFESVYDIPLGDIVV DVVAVDDGQIFPVGLDAQGRGTFTGTPGKFYRVQVHSEVTSEQIEALFKSYDGLTGNLEGWLRSEWQGFKPQWSQSVATAAGNGMLAGSWAAIEGVWDSL GMLSEILQDPGAFADRLGSGAADLIRLAESAPDVMQKLQLLVSDEAALCLLLRSASLWLEMLPPSQIAGKTAEMASMMIVQVLLDVLIGVVLTFVGAGAG IAYLTLRLADRAAQLLTVVKRLVKAMFGIVNTFIHYVDQYKTVAARGIAAGVKKGRMQLRWDAKRNAALKKNEHHDDSPEQAKNPNGDSADCAPLTCTNG CPVSMVTGEELLTLTDGTLDGLLPFEFTRLYRTSAVEIDVGLGFGWSHSLAHRLEFDGEAVVWVDHENRRTRFPLPSVERPQIHNSLSRAAIFLGDEPEE LILALAGDAARFYHFRAGRLTAVSDAYGNRLTVHRDHSERVQRLDSGAGRSLLLRYDRAHLVAVDYQVFEAGGWRTEQTLVSYCYDARQRLLAATNAVGD SERYDYDDQHVILQRQLSGGASFFWEWERSGKAARCVRHWASFAQMNTRYVWDDSDRVTVHYVDGTEETYVHDDSARLVRKVEADGGEHLKAYDAAGRLI AEQDPLGAVTEYRYDDVGRLIALLPPDNEPTSYEYRNGFLHSRSRGDAVWTYRRNAEGDVTEAVDPDGQVTHYYYDTRGQLLSIRYPDSSRHKLSWNDLG QLIEETLPDGGVRRFSYDTLGRRTTTCDEHGAVTRQQWDAIGRLVQMTLPTGATRAYSYGAYGQVTAERDELGRITRYEYDDDLHLVSRRINPDGTRVQY RYDHAQLLLTEIENESGEKYRLDYTPSGLIRQETGFDGRRTAYAYDRNGHLLEKTEFGDDGSTLVTAYARDAAGRLLLKTLPDGVQVEYRYDRLGRLIGV DDGQQHPLAFEYDLQDRLITEHQGWGTLRYAYDACGQLKRQRLPDNSKLDYHYAKGGALTAIDLNGTRLTSHIYQSGREQQRQQGLLLSEYAYDDQGRLL AHAVGHQHASLYRRDYAYSANGNLEHIADSRHGQRTYGYDALDRLIRVRHSRDELPEAFAHNPAGNLLMQDRPGPTRIKGNRLLMQGDRHYDYDAFGNLI RERRGRDQLLITEYRYDCQHRLIGLTRPDGQTATYQYDAFGRRIRKTVDGHSTEFFWQGDHLVAESSKVQYRSYVYEPGTFRPLALLDGKGAKRACPFYY QLDHLGTPQELTDYSGEIVWSAQYDAYGKVAAITLAGEDYLDQPLRFQGQYFDAESGLHYNRHRFYDPRLGRYLTPDPIKLAGGLNQYQYVPNPTGWVDP LGLSCSCPPTNPRRPMRYEAGRVVVEEGSPSLPKMTTQERRARLDEVAEENAKRRVYEYENLYGMHTVKKHSSEISDPALKQRGINGADPHTGIVPRGAR GNLSSQFHNWRMHLGALNKAMTKDKNGRIMHTGKDQNHAPIVRLELPGAGRGYRPNKRDEQNPTLNENLNWFEVKFDQINTQEPFTGFPAEGR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site