Pseudomonas fluorescens C3, VC34_RS28810
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C3 FCC4LTTACXX-wHAIPI007897-94_L5_1_(paired)_contig_43, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGATGAGCATCTATATAGATGGCACGGTGGCAGCTTCCAAAACGAGACCAAAGGAAAGCCACTTAACCCACTGGTTCCTGAGGATTTTTGAACCATGAC TAAGATAAGTATTGCTTCTGCTGCCCCCACTAGTGACCTTGAAGTTTCAAAATTCCTGCACCAACGATTTAAGATGTCGCTGATTGGCTCACAAAAAAAA CTCGCCATGGGCGATAAAGGTTTTTTTTACACATGTGATCTCTACGGAAATGACCATGTTCAGCGCGACAAGGATATTCGCGACTTAATCGCCTTCTTCA GTCAAAAGAATCTTCCTCTCCTGCTCTTAGAAATAGAAGATGAACAAGAGTGGGGGGATTTAGATACAGACAATCTTAGTCAGTATTCAATATCTGAAGA GGAACTGCTGAACGCTCTGGACTCATCTAAAGGGCTTTACGAGTAACTGACCCTTTCTTAGTACGTATAAGAACATAATGGGTGTCCCCTTTGACTCTTC
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| DNA Sequence for Gene |
>VC34_RS28810
TACGCCAGGGATGACAAGGGCAGCGTCACGGTTACCAACGCTGATGGCAGCGAAGAGGTCTACACCCACGACGATAAGGCTCGACTGGTTGCCAAAGTCG ATCCAGACGGTGCGGAACACCTAAAGGCCTACGACGACAAGGGCCGCCTGATAGCAGAGAAAGATCCACTCGGCGCCGTCACCGAATACCAGTACAACGA CGCCGGCCGACTGGTCGCGGTCATTCCACCGGAAGATGCACCGACAACCTACGAGTACTACCGCGGCTTCGTCCGCGTCGTGAACCGTGGGCCGGCGACC TGGAAATACTGGCGCAACGACCAAGGCGACATCACCGAACAAATCGACCCAGACGGCAATTCGACCCATTACAGCTACAACCGCCAGGGCCGCCTGCTGG AAATCCGCCACCCCGACGGCAGCCGTCATCAACTGGGTTGGAACAATCTCGGCCAACTGCTCGAAGAACAGCTGCCGGACGGCGGTCAGCGCAAGTACCG CTATGACGCGCTAGGTCGGCAAATCACTCGCCAGGACGAAAGCGGCGCGATCACTCAATACCAATGGGACGCGGCGAACCGCCTCGCGCAAATCACCCTG CCCGGTGGCGCAACCCGTGCATTCACCTACAACGCCTACGGCAAAGTCACCGCCGAACGTGATGAACTGGGTCGCGTCACCCGCTTCGAATACGCCGATA ACCTGCACCTGGTCAGCCGCCGCATCAACCCGGATGGCAGTCAGCTGCGCTATCGCTACGACAACTCGCGCCTGCTGCTCAGCGAGATCGAAAACCAACG TGGCGAGCACTACCACCTCGACTATTACCCTAATGGCCTCATCCAGCAGGAAACCGGTTTCGACGGTCGACGTACCGCCTACGAATACGACCTCAACGGC CAGTTGCTGAAGAAAACCGAGTTTGGCGACGACGGCAGTGAGCTGGTCACTGAGTACCAACGCGACACCGCTGGCCGCTTGTTGGTAAAAACCCTGGCCG ATGGCGAGAAGATTCACTACAGCTACGACGCCCTCGGTCGCCTCGTTAACGTCGACGACGGCCACTGGCCCCTCGCTTACGAATACGACCTGCAAGACCG CCTCATCACCGAGCACCAAGGCTGGGGCACCCTGCGTTACGAGTACGACCAACTCGGCCAGCTCAGCCATTGCCGCCTACCTGATGGCAGCAAACTCGAC TACCGTCACCAATCCGGCGGTCGCTTGAGCAGTATCGACCTCAATGGCTCGCGTTTGACCACTCACCAGTTCAGCGCCGGTCGCGAACAGCAGCGTCAAC AAGGTCTGCTGCTCAGCCAATACCAGTACGACGAACAAGGCCGACTGCAAGCTCACAGTGTCAGTCAGCAAGACCGAAACCTGTTCCAGCGCCGCTACGC CTACGACGCCAACGGCAACCTCGCCGGCATCGACGACAGCCGCAAAGGTAATCGCAGCTACCACTACGACCCGCTCGACCGCCTGATCAACGTCCGTGGC ACCACCCCGGAAAGCTTTGCCCACGACCCAGCGGGCAACCTCCTGGGTCAAGGCGACCAGCCAACCACGAACCTGGCCAACGTAAAAGGCAACCGCCTGC TCATGCAGGGTGATCGCCATTACGACTACGACGCCTACGGCAACCAGATCCGCGAACGCCGTGGAACCGGGCAAAAGCTCATCACCGAATACCGTTACGA CTGCCAGCACCGACTGATCGGAGCCAGCCTCCCGGGTGGCAGCATCGCGAGCTACAAGTACGACGCCTTCGGCCGTCGAATCGCCAAAACCGTCGATGGT CAAACCACGGAATTCCTGTGGCAAGGCGAACGCCTCATCGCCGAAAGCGCGGACAACCGCTATCGCAGCTACATCTACGAGCCGGGCAGTTTCCGCCCAT TGGCGATGCTCGATGGCGAAGGCCCGCTGAAAGCCACGCCGTTCTACTATCAACTCGACCACCTCGGCACCCCGCAGGAACTCACCGACTACAGCGGCGA GATCATGTGGTCGGCGAAATACCGCGCCTACGGTAACCTTGCCACCCTCGACGTGGCGGAAATTGATAACCCACTGCGCTTCCAGGGTCAGTACTTCGAT GCGGAAACGGGCTTACATTACAACAGGCATCGCTACTACAATCCGGGCACTGGGCGGTATTTGACGCCGGATCCGATCAAGCTTGCAGGTGGGTTGAACA ACTACCAGTACGTGCCTAACCCTACTGGGTGGGTGGATCCGTTGGGGTTGAGCGATACC
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCCCGACGCCCGACTGTAAGCTGCCCAATAATTCGGCAAATGCAACGAAACCCGACAGCATTCCTATGTCACAAGCCAAATATGATGAAGTTATTAATC TTGAGAAAGGGAACAGACCTGTTGATACGCGTGAGTATCTGCCGGAACAATACGTAAATATGCATGAAGAAGCCTTCAAGCGACAGGGAGGCTCATTTGT CGTTATCGATGATTGGATTGAACGCTCGGCCTATCCAACATTCCCACCTAGAAAATTTGTAGGTCTGCCGTCCGAAATGGATACTGTGGTTGCAAAATAC AAAGCAAGCGGTGGTAACTGGCAAGTGCTCAATAGAGAGCTCAATTTAGGTACATCTGACCTATCCTCCGCCAAAATTTATCTGGTAAAAATAAAACCTG ACGACCCTAGATTTAAATATGAAATCCCAAATGGTAACGAAGCCGGTGCTTATCCAAAAGAATGGGTACCTGGAGGCGAAACGAAAAGCGGGACGAAAGA
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| Amino Acid Sequence |
>type IV secretion protein Rhs
YARDDKGSVTVTNADGSEEVYTHDDKARLVAKVDPDGAEHLKAYDDKGRLIAEKDPLGAVTEYQYNDAGRLVAVIPPEDAPTTYEYYRGFVRVVNRGPAT WKYWRNDQGDITEQIDPDGNSTHYSYNRQGRLLEIRHPDGSRHQLGWNNLGQLLEEQLPDGGQRKYRYDALGRQITRQDESGAITQYQWDAANRLAQITL PGGATRAFTYNAYGKVTAERDELGRVTRFEYADNLHLVSRRINPDGSQLRYRYDNSRLLLSEIENQRGEHYHLDYYPNGLIQQETGFDGRRTAYEYDLNG QLLKKTEFGDDGSELVTEYQRDTAGRLLVKTLADGEKIHYSYDALGRLVNVDDGHWPLAYEYDLQDRLITEHQGWGTLRYEYDQLGQLSHCRLPDGSKLD YRHQSGGRLSSIDLNGSRLTTHQFSAGREQQRQQGLLLSQYQYDEQGRLQAHSVSQQDRNLFQRRYAYDANGNLAGIDDSRKGNRSYHYDPLDRLINVRG TTPESFAHDPAGNLLGQGDQPTTNLANVKGNRLLMQGDRHYDYDAYGNQIRERRGTGQKLITEYRYDCQHRLIGASLPGGSIASYKYDAFGRRIAKTVDG QTTEFLWQGERLIAESADNRYRSYIYEPGSFRPLAMLDGEGPLKATPFYYQLDHLGTPQELTDYSGEIMWSAKYRAYGNLATLDVAEIDNPLRFQGQYFD AETGLHYNRHRYYNPGTGRYLTPDPIKLAGGLNNYQYVPNPTGWVDPLGLSDT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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