Pseudomonas fluorescens C3, VC34_RS28810

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	168	205	2.3E-5
PANTHER	PTHR32305	-	-	-	649	752	1.5E-41
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	189	230	2.5E-9
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	322	351	2.1E-4
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	342	372	1.2E-4
Pfam	PF03527	RHS protein	IPR001826	RHS protein	649	681	2.8E-16
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	92	124	0.0094
Gene3D	G3DSA:2.180.10.10	-	-	-	90	272	6.7E-30
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	566	598	8.3E-6
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	362	398	3.0E-5
SUPERFAMILY	SSF69304	Tricorn protease N-terminal domain	-	-	8	280	2.09E-7
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	106	141	2.1E-9
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	322	353	6.3E-6
Gene3D	G3DSA:2.180.10.10	-	-	-	1	89	5.9E-13
Gene3D	G3DSA:2.180.10.10	-	-	-	359	749	1.6E-82
NCBIfam	TIGR03696	JCVI: RHS repeat-associated core domain	IPR022385	Rhs repeat-associated core	674	750	4.8E-28
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	44	77	2.0E-8
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	126	166	1.3E-8
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	175	205	5.1E-5
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	44	74	1.4E-7
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	210	247	4.1E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.