Pseudomonas fluorescens C1, VC33_RS02955

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain C1 FCC4LTTACXX-wHAIPI007895-92_L5_1_(paired)_contig_3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGGTGAAATGGACATCTTCCATCGTCACGAAAGCATGGCCGGCAATGGCGAGGTGCTGTTCTCCATGGCCAATGCGGTCAAGCCGGGCGTCTTTGATCTG GATGACATCGATCATTTCAGCACCCCGGCGGTGAGCTTCTTCCTCGGTCTGCCAGGCCCGCGTCATCCCAAGCAGGCCTTCGATGTGATGGTGGCCGCGG CGCGCAAACTGTCCCAGGAACTGAACGGCGAACTGAAAGACGACCAGCGCAGCGTGCTGACCGCCCAGACGATTGAGCACTACCGTCAGCGCATCGTTGA ATTCGAGCGTCGCGCCCTGACCCAGAAGCGTTGAAATTGACAACGTATGGGGGACTGCGCCGCGTCTCCCGTACCCTGTAGGAGCCGAGCTTGCTCGCGA TGGCGATCTCAAAGACGCCATCGCCGGCAAGCCGTGCTCCTACAATGATTTAACAGATTGAGCAGCCTCGGCTGCTCTTTTGCTTTATGAGAGAACACCC
DNA Sequence for Gene
>VC33_RS02955
ATGACCGCCGCCAAAAACCGCATTCTAGAGCTGCGCGCTGAGCTGGATCAGCACAATTACCGTTACCACGTGCTGGACGAGCCCAGTATTCCGGACGCTG AATACGACCGCTTGTTCCACGAGCTCAAAGCCCTTGAAGCGGACCATCCCGAACTGATCACCAGCGATTCGCCGACCCAGCGCGTGGGCAGTGCAGCGTT GTCGGCGTTCACGCAAGTGCGTCACGAAGTACCGATGCTCAGCCTTGGCAACGCCTTCGAAGAAACCGACATGCGCGAGTTCGACCGCCGGGTGACAGAA GGCCTGGATCTACCGGTCGGTGATCTGTTCGGTGGCGGCGCGGCGGTGGAATACAGCTGCGAGCCTAAGCTCGATGGCCTGGCGGTCAGCTTGCTGTATC AGGACGGCGTGCTGGTACGCGGCGCGACGCGCGGTGACGGCACCACTGGCGAAGACATCAGCATCAACGTGCGCACCGTGCGCAACATTCCGCTCAAGCT GCACGGCACTGGCTGGCCTGCGACCCTGGAAGTGCGCGGCGAAGTGTTCATGTCCAAGGCCGGTTTCGAGCGGCTCAATGTCACGCAACTGGAAGTCGGC GGCAAAACCTTCGCTAACCCGCGTAACGCCGCCGCCGGTAGCTTGCGCCAGCTGGACTCCAAGATCACCGCCAACCGCCCGCTGGAGTTCTGCTGCTACG GCATCGGCCAGATTTCGGCGGACATCGCCGACACGCACATCGGCAATCTCAAGCAACTCCAGGTGTGGGGCATGCCGATCAGCCACGAGCTGAAACTGGC GCACGGCATCGACGAATGCCTGGATTACTACCGCGACATCGGCGAGCGCCGCAACGCCCTGGCGTATGAGATCGACGGCGTGGTGTTCAAGGTCAACAGC ATCGCCTCGCAGCGTGAGCTGGGCTTCCGCGCTCGCGAGCCGCGCTGGGCGATCGCGCACAAATTCCCGGCCATGGAAGAGCTCACCGAGTTGCTCGACG TGGAATTCCAGGTCGGTCGTACCGGCGCTGTCACGCCGGTGGCGCGCTTGAAACCGGTCAAGGTGGCCGGCGTCACCGTGGCCAATGCGACGCTGCACAA CATGGACGAAGTCGCGCGTTTGGGCCTGATGATCGGCGACACGGTGATCATCCGTCGCGCCGGAGATGTGATTCCCCAAGTGGTGCAAGTGGTGCTCGAG CGCCGTCCGGAAAATGCCCGGCCGGTGCAGATTCCCGAGCAGTGCCCGGTGTGCGGCTCACACGTCGAGCGCACGCAATTGGTCAAGCGCAGTAAAGGTC GCGAGACCGTCAGCGAAGGCGCGGTGTACCGCTGCGTCGGTCGTCTGGCCTGCGGGGCGCAGCTCAAGCAGGCGATCATTCACTTCGTTTCCCGTCGCGC GATGGACATCGAAGGCCTGGGTGACAAGAGCGTCGAGCAACTGGTCGACGAAGGCCTGGTCAGTTCGCCAGCCGATCTGTATGCCCTGAAGTTCGACGAC ATCGTCGACCTGGAAGGTTTTGCCGAACTGTCGAGCAACAAACTGCTGAGCGCCATCGAGGACAGCAAGAAGCCAAGCCTGGCGCGCTTTATCTATGCGC TCGGGATTCCTGATGTCGGTGAGGAGACGGCCAAGGTGCTGGCGCGCTCTCTCGGTTCGCTGGAGCGGGTTCAGCAGGCGTTGCCGCAAGTGCTCACGTA CTTGCCGGATGTCGGCCTGGAAGTGGCATATGAGATCCACAGTTTCTTTGAAGATGCGCACAACCAGCAGGTGATCGCGGAACTGCTCAAGCACGGCCTG CAGATTCAGGATCAGGGCGAGCTCGGTGCTGAGTTTGCCGCGAGTACCACGCTGGGCGGCTTCCTCGACAAGTTGCACATTCCGTCGGTGGGGCCGGGCG GGGCACAGAAGCTGGCGGACAAGTTTGGGTCGCTGGAAGCGGTGATGAGCGCTGACTGGCTGGACATGCGTCAGGCGCTGCCAGAGAAGCAGGCCAATTC AGTTCGCGAGTTTTTTGCCGTTGAAGACAATCGCCAGCTTGCGCAGGCGGCCGAGCAGCAGTTGCGCGATTTCGGCATGCACTGGCTGAGCGAGAAGAAA GTCGTCGAAGGCTTGCCACTGGCTGGGCAGACCTGGGTGCTGACCGGTTCGCTGGAGTTGATGAGCCGCGACATCGCCAAGGACAAGCTTGAAAGCCTCG GCGCCAAGGTGGCGGGCTCGGTGTCGGCCAAGACCCATTGCGTGGTGGCCGGGCCGGGCGCCGGTTCGAAGCTGGCCAAGGCCAATGAGTTGGGTTTGAA AGTGCTGGATGAAGAAGCGTTTGTCGAATTCCTGAAACAACACGGTATTTCTGTTTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGATCGTTCCCACGCTCCGCGTGGTAGCGCATCCCGTGACGCTTTGCGTCACAGCGGACGCGGAGCGTCCGGGGCGACATTCCCACGCAGAACGTGGGA ACGATCTTCGCGCGACAATGATCTAGTCTTGGCAAGCCCCAGGGAGAGATCGCCATGTACCGCTTCTTTGAACAGCTCAGCTCGCGCATCGCCGCGCCTT TCATGGGCGAAAGCGCGCGCAACAGCAAGGTCTGGCAGTGTCGATGCGGGCAATCGCTGTTCTTTCGCAACAGTCAGTGCCTGGCCTGTTCGGCGGCGCT CGGTTATCAGCCCGAGCAGGGGCGTCTGTCGTCGCTGCAACCGGGTTTACAGGCGGATACCTGGCTGGTCGACGCCGATCCGCAAGCCGGTGTGTTTCGC CGCTGCGCCAATCTCGACTCCGCGGCCGCATGTAATTGGCTGCTCCCGGCCAACGACCACGATGCGCTATGCATTGCTTGCAGCCTGAATCACACCATCC
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MTAAKNRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEADHPELITSDSPTQRVGSAALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTE GLDLPVGDLFGGGAAVEYSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISINVRTVRNIPLKLHGTGWPATLEVRGEVFMSKAGFERLNVTQLEVG GKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQISADIADTHIGNLKQLQVWGMPISHELKLAHGIDECLDYYRDIGERRNALAYEIDGVVFKVNS IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLE RRPENARPVQIPEQCPVCGSHVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQLVDEGLVSSPADLYALKFDD IVDLEGFAELSSNKLLSAIEDSKKPSLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAYEIHSFFEDAHNQQVIAELLKHGL QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEAVMSADWLDMRQALPEKQANSVREFFAVEDNRQLAQAAEQQLRDFGMHWLSEKK VVEGLPLAGQTWVLTGSLELMSRDIAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVEFLKQHGISV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site