Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS08745

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens PICF7, complete genome. [Details]
DNA Sequence Upstream of Gene
AAAAGTTCCTGACGAGACCTGTTTTCATGACGTATCGAATCAACGAATTCCAGTTTCAACTGCCCGCCAGTGAGTTGCAGGACGCGACAATCAATATCCT CAAGTTCCCTGAATTGGGAACATCCCTGATTGTCAGCCGCAGCCTGCTCGCCGAGGGTGAAACCCTGCACAGCAACTTCAACGACCAGCTCCAGCGCCTG GAAAAACAGGTGCAGGATTTGCGCTACCAACCCGGTGTGGACGTGCGTTTGGGCGCAGCCCAAGAAGTGGAAGGCATCGAACTGCGCAGCCAGTTCAACA AGGGCAATGACAAAGTGTTCCAGTACCAGTTGGCGCTGGTGCTACCGGGAACGCGCAAGATGCTCGCCTTGAGTTACGTGAAGGCCGACAAGCTCGGGGA TGCCGAGGCGGCGCATTGGGCGTTGATTAAAAATTCGCTGTCGTTCGACGCCATTTCTTGATGAGCTGCTTGTATGTCTGACGCTCTATGGGCTGCCAGG
DNA Sequence for Gene
>PFLUOLIPICF7_RS08745
ATGGGCGATGCGCTGACCCACACCTCCATGATGGCCGACATCCTCGGCGGTGTGCTGGAAGTGGCGGTGGGGGTGACGATTCCTCCCGCCGGTATCGGCG GCTGCATCCTCGGCGCGGTGGTGGGCATTGTCGTCGGCATGGCCATGAGCAAGACGGGGGCCGACAAGGGCCTCAGCAAGATGTGCGAGAGCTTCGCCAA CGCGCTGTTCCCGCCCGTGGTGGAAGCCACGATTGCGGTGGGTTCGACCGACACCTTCGTCAACAGCATTCCGGCTGCACGGGCCGCAGGCTCCATTCCC TCGCACGTGGCGCCCGCTGGCACAGAGCTTGAGCAAGTGCCGCCGGAGCCCGACCCCGAGCCACGACCCGAGCCCGGCTTTCTGGACATGGCCGAGGGTT TCTTCTCCCAACTATGGCGCCCCACTGTCGCCACGCCTGCACCGGGCGTGGTACCGGCCCTCACCGACATGGTCCTGTGCGCCCGCCATCCACCGATGCC ACCACAGCTTCTGGCCGAAGGGTCTGACAAAGTCACCATCAACGGCCAGCCCGCCGTGCGCAGTGGCGACCGCAGCATGTGCGATGCGACGGTGGTGTCG TCGGGGCTGATCTCGCCAAACGTCACCATTGGTGGTGGGACGGTGGTGGTGCAGGAGATTCGCAGCGGGAAAACCCCTGGGGTGGGGTTGGCGATTGAAG CGCTGATGATGCTGAAAGGTGCCAAAGGCAAGACGCTGAGTAATTTGCCGTGCATGTTGCTCGCGGGGGTAACTTCTTATGCCGTCAGCCAAGCGATGGG CGCTGCAGCCAATGCGACGATGGGGTCACCTAACCCGGTGCATGCGGCAACTGGGGCCAAGGTATTGGGTGGCGAGACTGAGCTGGATTTTGTATTGCCC GGCATCCTGCCAATCGATTGGCAACGTTTTTATAACTCGCGAGATGAGCGCCGCACCGGGATGTTTGGTGCAGGCTGGAGTGTCCCGTACGAGATCAGCG TAGAGATACTGCTACACCCTGACGGCGGTGAAGAATTGCTCTACACCGACGAGCAAGGCAGGCGAATCAACCTTGGCGGTATATCACTTGGCAGCGCGAT GTTCAGTCCGGGAGAGGGTTTGAGCATTCGGCGACATCGCAATGGTCAGTTGCTGATCGAAAGCGCCGACGGTATATATCGCTTGTTCGAATCCACTCCG GCAAACGTATCACTGCTACGCCTTACTCAGCTTGGTGACCGCAACGACCATCGCATCCACCTCAACTACGACGCCGCCGGGCGTTTGGTGCAGTTGCACG ACAACCTTGATCTGGTGCAGGTTGAATTAATCCGCGACCAGGGTCACGTGTCCAAGATTGAGCGTGTTTACCCTGATCAGCGTCGTGAAGTGCTCGTGAG TTACAGTTACAACGCAACTGGCGATCTGACAGAGGTGCGCGATGCCACCGGTCAGATACAACGACGCTTCAGTTACGACGCAGGCAGGCGGATGGTAGAG CACCAACTGCCTGCCGGACTGCGCTGTTTTTATGAGTGGGCCTTGGTTGAGGACGTGGAATGGCGCGTATCACACCATTGGACCGATGAAGGCGATGCTT ACCATTTCGAGTACGACCTGAGTGCCGGTATCACGCGCATCACCGACGGCATGCAGCGCATCAGCATTCGTCATTGGAACAACCAGCACCAAATCACCAA GTACAGCGACAATCTTGGCCAGACCTGGCTGTTCGACTGGAACGATGAGCGCCAATTGCTCGGTGCTACCGATCCTCAGGGCGGGCGCTTTGAATATAGC TACGACGAAACCGGTAACCTCATCAGTGAAATCGACCCGCTGGGCCGTCGCGATTCGACGATGTGGCTCGAACACTGGGCATTACCTCTGGTTGAGACCA ACCCCGCCAACCACAGCTGGCGCTATCAATACGATCAGCGCGGTAACTGCATCGCCGCCACCGACCCGATGGGCCACATTACCCGTTATCGCTACGACAG CCACGGCCACCCCGTGGAAATCATCGACGCTACCGGCAAAAGCAAAAAGCTGCGCTGGAGTCCGTTTGGGCAATTGGTCGAACACATCGATTGCTCGGGT TATTCGACGCGATTCGGTTACGACGAGCGGGGATTTTTACAGTTCATCACTGATGCGCTCGGAGAACGTACTCAGTTCAGCCATGACGCCCGTGGGCGGC TGATCAGCAGCCAATTGCCTGACGGGCGAACCGAACAGTACACACGTGATACCAGTGGCCTATTGCTGGGTTACACCGACCCGGCAGGGCACACCACGTT GTATCAACACAATAGGCGTGGCCAGGTGTGTCAGCGAACGGATGCCTATGGCCGACGGGTGAAGTTCGCTTATGACAGCTATGGACGGCTGAAAGCCCTG ATCAACGAGAATGAAGAAAGCTACCAGTTTGTCTGGGACGCCGGGGATCGCTTGACCGAACAGCGAGACCTCGATGGCAGCGCCAAGCGCTACACCTATG ATCTGCTGAACCACATGACTGCAATGACGGCCGTTCCCGCGCCTTTCGACAATACTCTGGTCAACGCTGCCGAGACGCCGTCACCTATCGTTCACCGGAT GGAACGCGACGCTGTTGGCCGACTGATTGCAAAAATGACCGATGATGGCCGCACCGAATACGTTTACGATTCGCTGGACCAGCTCTGCGCCGTCACCTTT ACCGATCTGTCGGGCGATACCCAAGTCCTGAGTTTCGCATACGCTCCTCTCGGCCGGTTATTGACCGAACAAAGCCCTATGGGCACCTTGCAACATCACT ATGACGAACTCGGCAATCTAACCCAGACCCAACTGCCTGACGGCCGCTGGCTTAATCGGCTGTATTACGGCAGCGGCCACTTGCATCAGATCAATCTGGA CGGAGAAGTTATCAGCGACTTCGAGCGCGACCGCCTTCATCGTGAAGTGCTACGTACTCAAGGCCAGCTCAGCACACGTAGCGAATACGACCGGAGCGGT CGCCTGCGTTCACGCCATTGCCGTCATAGCCACCAGCCCATGCTGACGCCGGCGGCAATGCAACAGCACTTCGAATACGACCCCGCTGACAATTTGACCG GCAAACTCGATCAGCAACCAACGACCCAGCAGCGCCAGCTGTTGCACTACGACGCTACCGGCCGCATCACTGCCAGCCAGGATAACCTGCTGGGCCAGCG CGAAACCTTTACTTACGACGCCGCCGCCAACCTGCTGGACAGTCCGCACCCCGGAGCGGGCCTAGTAGTACATAACAAGCTGATGACCTATCAGGACAAG CGCTACCGTTATGACGGCTTCGGACGCATGATCGAAAAACGCAGCACCTCCCGAGGCGTACAACGATTTGCCTACGATGCAGAAAGCCGACTGATTGAAG TCCGCAATGAAAACGGCAACGTGGTGAAAATGCACTATGACCCACTGGGCCGACGCATCAAAAAAACGGAACACGGTATTGATGGTTACCCACTGAGTGA AACTCGTTTTTCCTGGGACGGCTTGCGTCTCTTGCAGGAACACAAATACAGCCAGACCAGCCTATACGTGTACGAAAATGAGGGCTATGAACCCCTGGCC CGCGTAGATGGCATTGGACAACTGCAGAAATTGCGTTATTACCATAACGATCTCAACGGCCTTCCGGCACAACTCAGCGAAGCTGACGGCCACATCGTCT GGCAGGCAACGTACCGGGTGTGGGGCAACACGCTGGAGGAAGTGCGAGAACCTCATTACATTGAAGAACAGAACCTGCGATTCCAGGGGCAGTATCTGGA TCGAGAAACAGGGCTGCACTACAACACTTTCAGATTCTACGATCCGGATATAGGGCGCTTTACATCCCCTGACCCGATCAGCTTGATGGGAGGACTGAAT CTCTACTTATACGGCTTCAACCCTTTCAGCTGGGTTGACCCGCTTGGCCTGGAAGGCATTGAGCTGGGCCCAGGTGAGCAATTAGGAAACCCGAAGGACA TCAACTTTGCCCAGCGAACCATCAATAGCGCGTTCGATACTCCCGAAGGAAAAAAACCTATCCAATCTGTCGTCAACCAAGTTAAAAAGGGCAAACTGAA AGTTACCGATTTCCCACCAATTGAAGTGGTGAATGTCAAAGGCCAGCTTGTCGCACGGGATGGCAACAGCCGCCTGGCGATTGCTGTGCTGGGCAAGGCA AAACAAATTAAGTACAAGGTCATTACCGACCCTACCCTGCTACGCGACTTTAATACCCGACTCAGGAATAATGGCTTGCCAAATAGCGGTACGTCCAAAG TACCAACATGCAAAGGATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGGCTATGACAGTACCTACAAGTAAAGATCGGGCATTCGCTATTGAGTTGCCAGTATGGCAGGCGCCGAATGACAACGTTCGCATCACCCTTGAGCGAGA TGATGTAAGAGCCGAGTTTCCTACTTGGACCAAAAACGCAAACTACTCCAAATATATCGGCATTCTGGATTTCTCTAATGTATGGGCCCTCAGGCTGGAG CGTAATAAACACCTGCACTATTACGAAAACCGCGAGGACGATGAGTTCAAGTCCTCCTATTGGGTAATCCCTGAGTCCTCTTGGCTTGAAGGTCTGACAA AAGAAAGGGATATCACTTCACCCAACTGGAGAGCCTATGACAAGAACAAATACACACACTATATTATCCAAAGCCATGATTATTACATTGAAATTATTGC GGGTGACGTGCGCTTTTCAAAAAGAATTGGCAGGTCCAATGATGACTCTAAATAAGAGGACGGCGCGTCTACACCCGTGAGCTTGCTGGTTGGCCTGCAG
Amino Acid Sequence
>type IV secretion protein Rhs
MGDALTHTSMMADILGGVLEVAVGVTIPPAGIGGCILGAVVGIVVGMAMSKTGADKGLSKMCESFANALFPPVVEATIAVGSTDTFVNSIPAARAAGSIP SHVAPAGTELEQVPPEPDPEPRPEPGFLDMAEGFFSQLWRPTVATPAPGVVPALTDMVLCARHPPMPPQLLAEGSDKVTINGQPAVRSGDRSMCDATVVS SGLISPNVTIGGGTVVVQEIRSGKTPGVGLAIEALMMLKGAKGKTLSNLPCMLLAGVTSYAVSQAMGAAANATMGSPNPVHAATGAKVLGGETELDFVLP GILPIDWQRFYNSRDERRTGMFGAGWSVPYEISVEILLHPDGGEELLYTDEQGRRINLGGISLGSAMFSPGEGLSIRRHRNGQLLIESADGIYRLFESTP ANVSLLRLTQLGDRNDHRIHLNYDAAGRLVQLHDNLDLVQVELIRDQGHVSKIERVYPDQRREVLVSYSYNATGDLTEVRDATGQIQRRFSYDAGRRMVE HQLPAGLRCFYEWALVEDVEWRVSHHWTDEGDAYHFEYDLSAGITRITDGMQRISIRHWNNQHQITKYSDNLGQTWLFDWNDERQLLGATDPQGGRFEYS YDETGNLISEIDPLGRRDSTMWLEHWALPLVETNPANHSWRYQYDQRGNCIAATDPMGHITRYRYDSHGHPVEIIDATGKSKKLRWSPFGQLVEHIDCSG YSTRFGYDERGFLQFITDALGERTQFSHDARGRLISSQLPDGRTEQYTRDTSGLLLGYTDPAGHTTLYQHNRRGQVCQRTDAYGRRVKFAYDSYGRLKAL INENEESYQFVWDAGDRLTEQRDLDGSAKRYTYDLLNHMTAMTAVPAPFDNTLVNAAETPSPIVHRMERDAVGRLIAKMTDDGRTEYVYDSLDQLCAVTF TDLSGDTQVLSFAYAPLGRLLTEQSPMGTLQHHYDELGNLTQTQLPDGRWLNRLYYGSGHLHQINLDGEVISDFERDRLHREVLRTQGQLSTRSEYDRSG RLRSRHCRHSHQPMLTPAAMQQHFEYDPADNLTGKLDQQPTTQQRQLLHYDATGRITASQDNLLGQRETFTYDAAANLLDSPHPGAGLVVHNKLMTYQDK RYRYDGFGRMIEKRSTSRGVQRFAYDAESRLIEVRNENGNVVKMHYDPLGRRIKKTEHGIDGYPLSETRFSWDGLRLLQEHKYSQTSLYVYENEGYEPLA RVDGIGQLQKLRYYHNDLNGLPAQLSEADGHIVWQATYRVWGNTLEEVREPHYIEEQNLRFQGQYLDRETGLHYNTFRFYDPDIGRFTSPDPISLMGGLN LYLYGFNPFSWVDPLGLEGIELGPGEQLGNPKDINFAQRTINSAFDTPEGKKPIQSVVNQVKKGKLKVTDFPPIEVVNVKGQLVARDGNSRLAIAVLGKA KQIKYKVITDPTLLRDFNTRLRNNGLPNSGTSKVPTCKG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site