Pseudomonas fluorescens MEP34, RU10_RS24245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 582 | 721 | 4.3E-11 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 1028 | 1263 | 1.4E-76 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 571 | 712 | 2.26E-16 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 438 | 572 | 4.71E-14 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 453 | 523 | 0.29 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 836 | 1012 | 1.2E-68 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 847 | 1008 | 5.7E-51 |
| Pfam | PF08447 | PAS fold | IPR013655 | PAS fold-3 | 477 | 568 | 8.7E-11 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 282 | 447 | 4.1E-6 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 852 | 1013 | 1.8E-49 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 450 | 581 | 3.2E-10 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 724 | 849 | 5.9E-30 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 672 | 714 | 7.3E-4 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 850 | 1018 | 1.4E-61 |
| Pfam | PF13426 | PAS domain | IPR000014 | PAS domain | 734 | 835 | 9.1E-16 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 731 | 833 | 7.04185E-12 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 586 | 652 | 6.2 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 531 | 574 | 5.2E-7 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 1022 | 1268 | 9.3E-127 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 1027 | 1274 | 2.09E-93 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 463 | 577 | 1.7E-15 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 722 | 788 | 2.4E-7 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 1023 | 1277 | 3.0E-102 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 794 | 836 | 1.7E-5 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 848 | 1010 | 2.65024E-62 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 734 | 844 | 6.13E-24 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 1022 | 1278 | 1.2E-107 |
| Pfam | PF13426 | PAS domain | IPR000014 | PAS domain | 598 | 713 | 1.5E-6 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 844 | 1010 | 3.6E-40 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 726 | 842 | 4.4E-19 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 842 | 1014 | 5.1E-45 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 722 | 1271 | 0.0 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 584 | 723 | 2.8E-20 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 475 | 571 | 3.69056E-6 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 1028 | 1266 | 1.61826E-117 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.