Pseudomonas fluorescens SF4c, QS95_RS23365

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain SF4c contig_20, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGATGTTCAGTTCCGGCATCGGGCGCGCTTCGCCTTCGAACTCGGTGTCGACGCCGGCCATGATTTTCAGCAGCGTGGATTTACCCGAACCGTTGAGGCC GAGTACGCCGATCTTGGCGCCGGGGAAGAAAGACAGCGAAATGTTTTTCAGGATTTCCCGCTTCGGCGGAACAACTTTGCCCAGCCGATGCATGGTGAAG ACGTATTGAGCCATGGAGAACCTTGGGTCAGTGACAGATGAATGATTGGAGCGCAGGCGATGCCCGGCCAGACCGATGCGCGTCGTTCACTTGATGGTCA TCAATGCGTGCGCGCTGAAAAAGTCTGAGTCTAGGAGCTGGAACGCTCCCGCGTAACCGGCAAAGCTACCTTAATGACGGAAGGCAGTCCAGCCGAGTGG GGCTGGCACTTCGCCACAACTCAAGGCATGCTAGCCGCCTCTTGGGCGTCCGGCTTATAGTGCACGTCGCGCCAGTCCAGCCAGACCGCAGGATTACAGC
DNA Sequence for Gene
>QS95_RS23365
TTGTCCAACGTCACTCCGCCAGCCTCTGTGAGCAGCACCCAACCGGCGCCCGGCTCGTCCCTGCGCGGAACCTTGAAAGGCGCGCTGGCGACGCTGGTGC TTTTGCTGCTGGCGCTGCTGTTCTGGCAACTGCTCGATCAACTGCGTGAAACCCAGAAAAACCAGCGTCAGTACACCATCGACTACACCGCCGACCTCGC CGCTCAGGTCAGCCTGAACATGGCGTTGAACGCGCAGATCGCCCTCAACCTGCTACCGATCGTCGAACAACCGCAGTCGGCCGACGAACAGCAGGCACTC CTGCGCAAACTTCAGAAATCACTGCCCGACCTGCGCAGCCTGGCCCTGCTCAGCCCGTCCGGAAAGATCCTCAGCGACAGCGCCGCCGACAGCCATGACG CCGATTACCTCAGCGATCTGGTGCGCCGCAGTCGCGCTCAGGCGCATTACTTCAGCAACGACGAAGACGGTTCGGTGGTGCATCTGCTGCTGCATCAGGC CAGTGGCAGCACTCGCGGTTACTGGGCGCTGCGGCTGACACCCACCTTCTTTAAAGCACTGACCAAACAAGGCGAAACAGGCATCCGTCCTCTGTGGCTG GTGGAAAACCGCATCAACCATCAGATCATCAGCCGCGACGAAGCGATGCCCGTCGGCAGCACCAGCGTCCTGACCCCGGACGATCTCGCCAACAGCGTGC TGACAGTGCCGCTGAGCAGCAGCGACTGGCAACTGCGTGGCCTGTTCGACCGCCAGCATGTGCTCGAACAACTGCTGCCGGCGTTCATCGGCAAATGCCT GTTGGGCCTGGCGCTGTCGCTGCTGCCGTTTATCGCCCTGCTCAACATGCGTCGCCGTCAGCGTCAGGTGCATGAGGGGCGTCGGCGTTATCAGGATATT TTCGAAGGCACCGGCGTGGCATTGTGCGTGCTGGATCTTTCGGGGCTCAAACAGGTTTTCGAAAGGGCCCAGATCCAGACCAGCGACCAGCTCAAGGCCT GGCTCGACCAGCCGGCACAGCGCCAGCAATTGCTCCACGAACTGCGGGTGACCGAGGTCAACCAGGTCGCGCTGCAACTGCTCAACGTCAATTCCTGCGA CCACGCCTGGCAACTGTTGATCGACGGTCAGCCGCACAGTCAGTGCGCCATCGGCAATCAGGTGCTCGACGCGGTGCTGCAGCAGCAAAAGCAGCTGGAA CTGGAAATCAGACTGCCGGACATCAATGGCCGCGACCAGCACCTGTGGCTGGTGCTGCGACTGCCCCAGGAACAGCACGACTACAAGGCCGTGATCCTGA GCATCAACGACATCACCAGCCGCAAACTGATCGAACTGTCGCTGCTGGAGCGCGAAGGTTTCTGGTCGGATGTGGTGCGCACCGTGCCGGATCATCTGTA TGTGCAGGACGTGATCAGCCAACGGATGATTTTCAGCAACCACCACCTCGGCCAGACCCTGGGCTACAACCGCACCGAACTGCATCAGATGGGCGAGTAC TTCTGGGAAATTCTCCTGCACCCGGAAGACGCCGACTATTACCATCGCTCGCGGCAGATGCAGCGTCACGCCGGTTACAGCCAGTTGCTGCAATGTCAGT TGCGCTTCCGTCATCGCGACGGCGAGTGGCGGCGCTTCGACATTCGCGAACAGGCGCTGGCCCGGGACAAGCACGATCAGGTCACGCGGATCATCGGCGT GGCCAAGGACATCACCGAGCAGATCGAAGCCAGCGAATCCCTGCGTGACAGCGAACAGCGCTACCGGATGCTCGCCGAAAGCATCAGCGACGTGATTTTC TCCACCGACAGCAAGCTGTCGCTGAACTACGTCAGCCCGTCGGTGCAAGCCGTGCTCGGTTATGACGCCGAGTGGATTTTCCAGAACGGCTGGCAGTCGA CCATCGCCAACCCGCAACAACTGAGCGGCATCTATCACCTGATGGATCGGGTCAGCAAAGCCTTGGGCAAACCCGAGCAACTGGTGATTTTGCGCAGCCA GGTGCAGACCCAGCTGTTCCTGTTCGACTGCCTGCGCGCCGACGGCCGCAAGATCCCGATCGAACTGCGCCTGGTGCTGGTGTGGGACGAGCATGGCGCC TTCGAAGGCGTGCTCGGGGTCGGTCGCGACATCAGTCAGCAGCGCCGCGCCGAGAAAGACCTGCGCATGGCGGCCACGGTATTCGAACACTCGACCTCGG CAATCCTGATCACCGACCCGGCCGGTTACATCGTGCAGGCCAACGAGGCGTTCAGCCGGGTCAGCGGTTACGCGGTGGGTGAAGTGCTCGACCAACTGCC GAACATGCTGACCGTCGACGAACAGCAGGACGCACACCTGCGCTACGTGCTCAAGCAGTTGCACCAGCACAGCACCTGGGAAGGTGAAGTCTGGCTCAAG CGCCGCAACGGCGAGCACTACCCGGCGTGGGTCGGCATCACCGCCGTGCTCGATGACGAGGGCGACCTGGCCAGTTACGTGTGTTTCTTCAGCGACATCA GCGAGCGCAAGGCCAGCGAGCAGCGGATTCACCGCCTCGCCTACTACGACGCCCTGACCCACCTGCCGAACCGCACGCTGTTCCAGGACCGTCTGCACAC CGCGCTGCAATCGGCCGAACGGCAGAAGTCGTGGGTGGTGCTGATGTTCCTCGACCTCGACCGTTTCAAACCGATCAACGACTCCCTCGGCCACGCCGCC GGCGACCGCATGCTCAAGGACATGGCCACGCGCTTGCTGGCCTGCGTCGATGATGACGACACCGTGGCGCGGATGGGCGGCGACGAATTCACCCTGCTGC TGCAACACCGCTCCAGCCGCGAAATGGCGCTGAACCGTGCGATCCACGTGGCCGAACAGATTCTTGGCAGTCTGGTGCGACCGTTCGTGCTGGAGGGGCG CGAGTTCTTCGTCACCGCCAGTATCGGTATCGCCCTGAGCCCGCAGGACGGCAATGAACTCAGCCAGTTGATGAAAAACGCCGACACCGCGATGTACCAC GCCAAGGAGCGCGGCAAGAACAACTTCCAGTTCTATCAGGCCGACATGAACGCCAGTGCGCTGGAACGTCTGGAACTGGAAAGCGACCTGCGCCACGCCC TGGAGCAGAATGAATTCGTGCTCTATTACCAGCCGCAGTTCAGCGGCGACGGCAAACGCCTGACCGGCACCGAAGCCCTGCTGCGCTGGCGTCATCCCCG TCGCGGGCTGGTGCCACCGGGGGATTTTATACCGGTGCTCGAGGAACTCGGGCTGGTGGTGGACGTCGGCGACTGGGTGATCAGCGAGGCTTGCCGTCAG CTCAAGACCTGGCACCAGAACCGTGTGCGCGTACCGAAGGTCTCGGTGAACATCTCGGCGCGGCAGTTCTCCGACGGCCAGCTCGGCACGCGGATCGCCA CGATCCTGCGCGAGACCGGCCTGCCGCCGGCTTGCCTGGAGCTGGAACTGACGGAAAGTATCCTGATGCGCGAAGTCAGCGAGGCGATGCAGATTCTTGC CGGTCTGAAGAACCTCGGCCTGAGCATTGCAGTCGACGACTTCGGCACCGGCTACTCGTCGCTGAACTACCTCAAGCAATTCCCGATCGACGTGCTGAAG ATCGACCGCACCTTCGTCGACGGCCTGCCGTCCGGCGAGCAGGACGCGCAGATCGCCCGGGCAATCATCGCCATGGCCCACAGCCTGAATCTGGCGGTAA TCGCCGAGGGCGTGGAAACCCATGAGCAACTGGACTTCCTGCGCGAGCATGGCTGCGACGAGGTTCAGGGTTATCTGTTCGGGCGGCCGATGCCGGCGGG CCGGTTCGAAGCGCAGTTCAGCAATGATGCGCTGTTCATGTTCGACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGATCGGCGGCGCGATCTTCGCGAGCAAGCTCGTTTCCACAGGGATTGATGTCGATCACAAAATCGCGGGGCGGCCTCGGTTATTGTGCAAACCGGCTGG TCAGCGAAAAGGCCGGCACGGACGCCACACATCTGGTATGAACGCCACTTGTCTGCGACATGATGTCGTTTCATATGCCATCCAAAACCCGTTGGGTTAG AATGCCCCCCTTTTCTGCCCCCCGATCCTTGAGGACCGCCATGTTCAGCCGTGATTTGACTATTGCCAAGTACGACGCCGATCTTTTTGCCGCCATGGAG CAAGAAGCCCAGCGCCAGGAAGAACACATCGAGCTGATCGCTTCGGAGAACTACACCAGCCCAGCGGTGATGGAAGCTCAAGGCTCGGTACTGACCAACA AGTACGCCGAAGGCTACCCGGGCAAGCGCTACTACGGTGGTTGCGAGTACGTCGACGTTGTCGAGCAACTGGCTATCGACCGCGCCAAAGAGCTGTTCGG
Amino Acid Sequence
>diguanylate phosphodiesterase
MSNVTPPASVSSTQPAPGSSLRGTLKGALATLVLLLLALLFWQLLDQLRETQKNQRQYTIDYTADLAAQVSLNMALNAQIALNLLPIVEQPQSADEQQAL LRKLQKSLPDLRSLALLSPSGKILSDSAADSHDADYLSDLVRRSRAQAHYFSNDEDGSVVHLLLHQASGSTRGYWALRLTPTFFKALTKQGETGIRPLWL VENRINHQIISRDEAMPVGSTSVLTPDDLANSVLTVPLSSSDWQLRGLFDRQHVLEQLLPAFIGKCLLGLALSLLPFIALLNMRRRQRQVHEGRRRYQDI FEGTGVALCVLDLSGLKQVFERAQIQTSDQLKAWLDQPAQRQQLLHELRVTEVNQVALQLLNVNSCDHAWQLLIDGQPHSQCAIGNQVLDAVLQQQKQLE LEIRLPDINGRDQHLWLVLRLPQEQHDYKAVILSINDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNRTELHQMGEY FWEILLHPEDADYYHRSRQMQRHAGYSQLLQCQLRFRHRDGEWRRFDIREQALARDKHDQVTRIIGVAKDITEQIEASESLRDSEQRYRMLAESISDVIF STDSKLSLNYVSPSVQAVLGYDAEWIFQNGWQSTIANPQQLSGIYHLMDRVSKALGKPEQLVILRSQVQTQLFLFDCLRADGRKIPIELRLVLVWDEHGA FEGVLGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVGEVLDQLPNMLTVDEQQDAHLRYVLKQLHQHSTWEGEVWLK RRNGEHYPAWVGITAVLDDEGDLASYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFKPINDSLGHAA GDRMLKDMATRLLACVDDDDTVARMGGDEFTLLLQHRSSREMALNRAIHVAEQILGSLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYH AKERGKNNFQFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGTEALLRWRHPRRGLVPPGDFIPVLEELGLVVDVGDWVISEACRQ LKTWHQNRVRVPKVSVNISARQFSDGQLGTRIATILRETGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLK IDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLREHGCDEVQGYLFGRPMPAGRFEAQFSNDALFMFD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site