Pseudomonas fluorescens SF4c, QS95_RS23365

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 PAS domain - - 584 724 2.7E-20
SMART SM00086 pac_2 IPR001610 PAC motif 672 714 7.3E-4
Gene3D G3DSA:3.30.450.20 PAS domain - - 463 577 1.4E-15
Pfam PF00563 EAL domain IPR001633 EAL domain 1028 1263 4.9E-76
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 347 448 5.58E-6
CDD cd01949 GGDEF IPR000160 GGDEF domain 848 1010 1.3782E-61
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 722 1271 0.0
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1023 1277 5.6E-102
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 844 1010 3.8E-40
Pfam PF13426 PAS domain IPR000014 PAS domain 734 835 2.5E-15
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 734 844 2.99E-23
CDD cd00130 PAS IPR000014 PAS domain 475 571 1.37288E-5
SMART SM00091 pas_2 IPR000014 PAS domain 586 652 2.7
SMART SM00052 duf2_2 IPR001633 EAL domain 1022 1268 1.2E-125
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 852 1013 2.9E-49
SMART SM00267 duf1_3 IPR000160 GGDEF domain 836 1012 4.8E-68
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 842 1014 6.8E-45
Pfam PF13426 PAS domain IPR000014 PAS domain 347 439 0.58
SMART SM00086 pac_2 IPR001610 PAC motif 531 574 2.6E-7
SMART SM00091 pas_2 IPR000014 PAS domain 453 523 0.34
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1022 1278 9.1E-107
SMART SM00086 pac_2 IPR001610 PAC motif 794 836 3.0E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 726 842 7.6E-18
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 849 1018 1.5E-61
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 438 572 2.97E-14
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 582 721 4.6E-11
Gene3D G3DSA:3.30.450.20 PAS domain - - 282 446 4.1E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 725 848 6.0E-29
CDD cd01948 EAL IPR001633 EAL domain 1028 1266 2.12205E-116
CDD cd00130 PAS IPR000014 PAS domain 731 833 4.02054E-11
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 571 712 1.27E-16
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1027 1274 4.58E-93
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 450 581 4.0E-10
Pfam PF08447 PAS fold IPR013655 PAS fold-3 477 568 4.9E-11
SMART SM00091 pas_2 IPR000014 PAS domain 722 788 1.0E-6
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 847 1008 1.8E-50
Pfam PF13426 PAS domain IPR000014 PAS domain 598 713 6.0E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.