Pseudomonas fluorescens SF39a, NX10_RS23950 (flhF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_24, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGGTCCTGCAAGCGCTGCTCGCCGAACACGTGCCGGTGCGCGACATCCGCAGCATTGCCGAGGCGATCGCGAACAACGCTGCCAAGAGTCAAGATACCG CCGCGCTGGTCGCCGCTGTGCGGGTCGGCGTATCCCGTGCAATCGTCCAAAGCATTGTAGGCACTGAGTCCGAGCTGCCTGTGATCACATTGGAACCAAG GTTGGAACAGATATTGCTCAATAGTCTGCAGAAGGCAGGACAAGGCTCGGAAGAGGGCGTTCTGCTGGAGCCGAGCATGGCCGAGAAGCTGCAACGTTCG TTGATCGAAGCGGCCCAGCGGCAGGAAATGCAAGGCCAACCGGTGATCCTGCTGGTAGCAGGCCCGATTCGCGCGATGCTCTCGCGCTTTGGCCGCCTCG CAGTCCCAGGGCTGCACGTGCTGGCCTACCAGGAAGTACCGGACAACAAGCAAGTGACCATCGTTGCGACAGTAGGGCCCAACGGCTGAGGTAGTGGTTT
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| DNA Sequence for Gene |
>NX10_RS23950
|flhF
ATGCAAGTTAAGCGTTTTTTCGCCGCCGATATGCGTCAGGCCATGAAGCTGGTTCGCGATGAGCTGGGCGCTGATGCCGCCATCATCGGCAACCGCCGCA TTGCCGGCGGCGTCGAGTTGACGGCGGCTCTGGATTACAAATTGTCGGCGCTGGCGCCACGGGTTCCGAACATGGAACTCGAAGACGAGCTGCGCAAGAC CCAGTCGCGCATCGTCACCGCCCAGGCCGAACTGAGCCTGCGTGGCGAAGCCGACGGCAACACCAATCAGCAGTTGTTCGCCGGGCTGCCATTGACCGCA GGCCTGCCGCTGACCGCTGCCGAACCGCTAAGCGAGCCAACCTACGCTGCCCCGGCGCGCCCGGCCGCAGCCCCTTCGCAAGCCTCGGCGGGTGTCGATC CGCGTGCGCTGGAGTCGATGCGTTTTGAATTGAACAGCCTGCGCGAGCTGATGGAAGTGCAGCTCGGCACCCTGGCCTGGAATCAGCTGCAAGGCAGCCG TCCGGCCCAGGCCAATTTGTATCGCCGTCTGCAGCGCATTGGCCTGTCCGGCCCGCTGTCGCGCGATCTGCTGGCACTGATCACCGATATCGAAGAACCC CGTCAGGCCTGGCGCATGCTGCTGGCGCACCTGGCGCGGATGATCGCCGTACCGGAAGTCGAGCCGCTGGAAGAGGGCGGTGTGATTGCCATGGTCGGCC CCGCCGGCATGGGCAAGACCACCACGCTGGCCAAGCTCGCTGCGCGTTATGTGCTCAAGTACGGCGCGCAGAATGTTGCGCTGGTCAGTATGGACAGCTT CCGCATCGGCGCGCAGGAACAATTGAAAACCCTCGGGCGCATCCTCAACGTGCCGGTAACGCACGTCGATCCGGGTCAGTCGCTGGTGCAGGCATTGGAT CCACTGCTACGCAAACGCGTGGTTTTGATCGATACTGCCGGCCTGCAAGCCAGTGATCCGGCGTTGCGCATGCAGCTCGAGAGCCTGGCCGGGCGTGGCA TTCGCTCGAAAAATTATCTGGTCCTGGCAACCACCAGCCAGAAACAGGTTCTAACCGCCGCTTATCACAGTTACAAGCGTTGCGGGCTGGCCGGCTGCAT CCTGACTAAACTGGATGAAACGGCCAGTCTCGGCGAAGTGTTGAGCCTGGCGATCAGTCATGAATTGCCGGTCGCGTACCTGACCGATGGCCCACGGATT CCGGATGATCTGCATCTGCCGCGCCGTCATCAACTGGTCAGCCGCGCCGTCAGCGTGCAAATGCAGGAAGAACCCAGCGAAGAAGCCATGGCTGACATGT TCGCTGATATCTATCACAGCCCGACCAAGCAGGTTGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAATCATGAACAGTTTTTGTACCTACATCGATGGTCTGCCACGCATTGTTCCGATCGTGAACGCGCAGCCAGTAATGTGGCCTCCGTCTATGCAAGAC AAGGTAAAGAAATAACATGGGCAGCATGCATCCCGTACAGGTGATCGCGGTGACCGGCGGCAAAGGTGGCGTCGGCAAGACTAACGTGTCAGTGAACTTG TCCCTGGCGCTGGCAGAGCTTGGCCGTCGGGTCATGCTGCTGGACGCCGACCTGGGCCTGGCGAACGTCGACGTTCTGCTGGGGCTGACACCCAAACGCA CACTGGCCGACGTTATCGAAGGCCGTTGCGAACTGCGCGACGTGCTGTTGCAAGGCCCGGGCGGGATTCGCATCGTGCCGGCGGCCTCCGGCACGCAGAG CATGGTGCACCTGAGTCCTGCGCAGCACGCCGGCCTGATTCAGGCGTTCAGCGACATCGGCGACAATCTCGACGTGCTGGTGATCGACACCGCTGCGGGC
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| Amino Acid Sequence |
>flagellar biosynthesis regulator FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVPNMELEDELRKTQSRIVTAQAELSLRGEADGNTNQQLFAGLPLTA GLPLTAAEPLSEPTYAAPARPAAAPSQASAGVDPRALESMRFELNSLRELMEVQLGTLAWNQLQGSRPAQANLYRRLQRIGLSGPLSRDLLALITDIEEP RQAWRMLLAHLARMIAVPEVEPLEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAQNVALVSMDSFRIGAQEQLKTLGRILNVPVTHVDPGQSLVQALD PLLRKRVVLIDTAGLQASDPALRMQLESLAGRGIRSKNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRI PDDLHLPRRHQLVSRAVSVQMQEEPSEEAMADMFADIYHSPTKQVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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