Pseudomonas deceptionensis DSM 26521, TR67_RS07485

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 598 714 5.43921E-4
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 847 1013 8.8E-41
SMART SM00091 pas_2 IPR000014 PAS domain 589 655 0.049
Pfam PF13426 PAS domain IPR000014 PAS domain 602 716 1.6E-4
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 585 724 5.9E-10
CDD cd00130 PAS IPR000014 PAS domain 478 574 3.4897E-6
SMART SM00086 pac_2 IPR001610 PAC motif 675 717 0.0054
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 714 837 8.22E-20
Gene3D G3DSA:3.30.450.20 PAS domain - - 727 850 2.3E-25
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 441 575 2.26E-15
SMART SM00086 pac_2 IPR001610 PAC motif 797 839 0.0014
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 729 845 1.6E-14
CDD cd00130 PAS IPR000014 PAS domain 734 836 1.02941E-7
Pfam PF00563 EAL domain IPR001633 EAL domain 1031 1266 9.0E-77
CDD cd01949 GGDEF IPR000160 GGDEF domain 851 1013 1.98837E-60
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1026 1281 4.2E-102
Gene3D G3DSA:3.30.450.20 PAS domain - - 587 726 2.0E-19
Gene3D G3DSA:3.30.450.20 PAS domain - - 449 575 8.8E-17
CDD cd01948 EAL IPR001633 EAL domain 1031 1270 5.9506E-117
SMART SM00086 pac_2 IPR001610 PAC motif 403 444 26.0
SMART SM00086 pac_2 IPR001610 PAC motif 534 577 2.3E-4
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 725 1272 0.0
SMART SM00091 pas_2 IPR000014 PAS domain 456 526 0.058
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 845 1017 7.7E-45
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 350 453 7.68E-9
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 855 1016 3.37E-48
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1025 1284 2.7E-105
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 574 715 4.19E-15
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 851 1021 3.1E-60
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1030 1276 1.05E-92
SMART SM00267 duf1_3 IPR000160 GGDEF domain 839 1015 2.4E-66
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 850 1011 7.6E-50
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 452 584 6.9E-12
Pfam PF13426 PAS domain IPR000014 PAS domain 737 838 1.2E-12
Pfam PF08447 PAS fold IPR013655 PAS fold-3 480 571 2.0E-10
Gene3D G3DSA:3.30.450.20 PAS domain - - 284 448 4.5E-7
SMART SM00052 duf2_2 IPR001633 EAL domain 1025 1271 7.0E-128
SMART SM00091 pas_2 IPR000014 PAS domain 725 792 4.9E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.