Pseudomonas cremoricolorata ND07, LK03_RS04990

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psw02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd17574 REC_OmpR - - 14 112 5.21179E-45
FunFam G3DSA:3.40.50.2300:FF:000008 Two-component response regulator OmpR - - 9 90 4.0E-37
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 138 240 2.18E-26
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 13 123 8.9E-29
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 136 245 2.7E-29
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 12 240 3.8E-47
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 166 238 2.7E-21
FunFam G3DSA:1.10.10.10:FF:000023 Two-component response regulator OmpR - - 136 245 4.1E-59
Gene3D G3DSA:6.10.250.690 - - - 91 128 1.5E-17
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 161 238 4.3E-23
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 11 122 9.4E-42
Gene3D G3DSA:3.40.50.2300 - - - 8 90 2.2E-19
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 8 131 5.12E-40
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 150 238 3.62212E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.