Pseudomonas cichorii JBC1, BH81_RS25480
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cichorii JBC1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCCACATGCCTGCCGGGCTGATGCCCATCAGTTGCTCGATGCGATGACGCATCTCGGCGGCGGCCTTGTTGGTGAACGTCACCGACAGGACCGAATGCGG GGAGGCTTGCTCGACCTGCATCAGCCATGCGATGCGATGCACCAGCACACGGGTTTTACCGGAACCAGCGCCGGCCAGGACCAACTGACGACCCAGAGAG GCAGCTACGGCCTGACGCTGGGCATCGTTGAGGGAATTCAAAAGGAGAGAGAGATCATCGCGCATCGCCGCATTCTAGGGTGCTGCGCCATGGCGGGCAA ACCATGCTTTGTCATGGGTAATAAAAAAGTCGTCGATGCTGACGATCGGTCATGTGCGACGGCGAATGGCGTCCCCTGTGTCGAAGTTGTGCAGAACAGC GCTGAAAGTCACCGTTTTATGATGGCGGCAGTTTGGTCTAGCCCAGCGCTTGTGTATGCTCGGCACATGCCAAGGTCTTATCAAATACAAGAACCCCGCC
|
|
| DNA Sequence for Gene |
>BH81_RS25480
ATGCCTTTCAGCTTCAGTGCCCACGATGCTTCTGACACCAGCCGGCGGGCCATTCGCAAGAAGTTCGCGACCCGGTTGAGGGTTGAGCGCACGCGCATGC TTTATCAGGGTTCATTGCTGCCGACCCTGTTCATGTTCATCAGTGGTCTGGTCTGCGCATGGCTGCTCTGGAGTCCTGAACGCTACGTGCTGGTCAGTAT CTGGCTGGTCTGGCTGGCGGTGCTTGTGGGCTTGCGTGTCATTCAGGTTGCAGCGTTCCGGGCGGCATCTCCCGAACGTCAGGCGCAACCGGTCTGGCGG CGAATGTTTCTGCTCGGCGCGGTGGTCAGCGGTCTGACTCTGGCCTGTGCGGCCATGGCCCTGGTGCCCGTGACCAGTTTCGAGCAGCAGGCCTGGGTGT TCGGCATGATTGGCGGCGCAACGCTGTGCGCCAGCGTGGCCTATGCCGTCAGCCTCACGGCGTTTCTCACCTTCAGCCTGTCGTGTCTGTTACCTCCCAT CGTCTATCTGTTTATGGGGGGCGACGTGCCTTTGCGTGGCTGGGGCTGGCTGGGTCTGATTCTGTTGTTTGCCCTGATTGTGGTGGCCTGGCAGATCAAT CGCCTGATACTGCGCAGCCTGTTGCAGCGTTTTCAGAACCAGGCCCTGATCGAGCATTTGCAGCAGGCCCGGGCCAAGGGCGATGAACTCAATGAAATTC TGGGCCGGGAGGTCGAGCAGCGTCGTCAGGCCGAGCACAGTCTGCGCGAGGCTCAGGCCGGTCTTGAGGAGCGTGTTGCGCAGCGTACCCTGGAGCTTGA GGCCGCCAATCTGGCCTTGAGCAAAAGCCCGCCGCGTCTGGCCGAGAAGGTTTTCGATGCGGTCAGCGAAAGCATCATGATTTTCGACCCGCAGTACCGG ATTCTCACCATCAATCAGGCTTTTTCCCGGCTCACGGGTTACACGCCTGAGGATGTAGTGGGGCGTCAGGTCATGGATATCGCCAGCAGTCGCGATGCAC GCCGTCACTTCCAGGCCATTCACCATGCCCTGGAGCAGACCGGAAGCTGGCAGGGCGAGCTGGTTGAGGCGCGCAAGAACGGCGAGTTGTATCCGCAATG GCTGCAAATGACTGTCGTGCGCGATATTGCCGGCAATGTCAGCCATATTGTCGGCTTCTTTACGGATCTTTCGGCCAACCGCGAATCTGAAGAGCGTATG CGCTACCTCACGCATTTCGATGAGTTGACCGGTCTGGCCAATCGCTCGCAATTCAAGGAGCGCCTGCGCGAAGCGAATCAGCGGGTGCGTCAGGGCGGAA GAAGCCTGGCGCTGCTGCATATCAATCTGGATCGTTTCAAGCTGCTCAACGAGAGCCTGGGCCATGAAGTCGCCGATCAGTTGCTCAAGCATGTTGCCCG CCGCCTGATCAGCGCCATGCCGGAGGCGGACACCATTGCGCGTCTGTCCGGCGATGAATTTGCCGTGCTGTTCGATGCCTATGCCAACCTTTCCAGTCTG GCGCGTGTCACCAGCCGCTTGCTGAGCAAGCTGCGTACGCCTCTGTCGGTGGCGGGTAACGAACTGGTGATCAGTGCTTCGGTGGGTATCAGCCTGCTGC CGGACTCTGCCCGTGAAGTCTCGGCACTGGTGAGTCAGGCCAATATGGCGATGCGGCATGCCAAGCATCTGGGCGGCAACAATTTCCAGTTCTTCACCGA AAGCCTGCGGGCCAGCACCCTGGAGCGCCTGCAACTGGAAATCCAGCTGCGCAAAGCCATTGAAGATCACCAGCTACAAGTGTTCTATCAACCCAAGATG CTGTTGGAAAATGGTCGTCTGGATGCGGCCGAAGCACTGGTGCGCTGGCGTCATCCGACACGGGGCATGGTGCCGCCGGGCGAGTTCATTGGTCTGGCCG AAGAAACCGGCCTGATTGCCGATATCGGCGAGTTCGTGCTGCGCCAGGCCTGCTGGCAGGCTTGTGAGTGGCAGCGTCAGGGCTTTGAGCCGATCCGGGT TTCGGTCAATCTGTCAGTGCACCAGTTGCGGCAGGGCAAGCTGGTCAGTCTGGTGCGGCAGGTCCTGGACGAGACGGGGCTGGCGCCGCATTTGCTGGAG TTGGAGCTGACCGAAAGCCAGTTGCTCGACAGTGTCGAACACATCATCGCGACCTTTCAGCAGTTGCGTGAGCTGGGCGTCAAACTGGCCATCGACGACT TTGGCACCGGCTACTCTTCATTGAGTTATCTCAAACGCTTCCCGGTGGACTACGTAAAGATTGATCAGGCGTTTATTCGTGGCCTCGATGACGGCACGGA AGATGCGGCAATCACCCAGGCGATCATCGCCATGGCTCACAGCCTGGGGCTCAAGGTCGTGGCCGAGGGTGTGGAAAACGAGAAACAACTGGAGTTTCTG AAGGCGCAGGGTTGCGATGAAGTTCAGGGCTATCTGATCAGTCGACCGCTCGAAGCGTCAATGATGGAGGGCATGTTGAGCCTGGCCCGGCAATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGCAGCGTTCCAAAATGTAGGATTATTCCCACAAAAAAGGAAGATTTATCATTCAATGGCTTGTGTATGACGTTCAGGGCTCGTTTAACTGGGCGGCTC GCAGGTCATGTAGTATAACTACAAGAAAGCTACAACCCGCCCACCGCATCATTAGCGAGTCTGCCTCTTGAATCTGCTGCAACACATCGCCCAGTCACGT AATCTGCTGCGCAAGTCGGAGCTCAAGGTAGCCGACCATGTGCTGCTTGACCCTGCGGCCGTGATGCACAGTTCCATGGCTGACCTGGCCCATAGCGTCG GGATCAGTGAGCCGACCATCGTGCGCTTCTGTCGCGCCATCGGTTGCACGGGCTTTCAGGACCTCAAGCTCAAGCTGGCGCAGAGCCTTGCCGCCGGAGC GAGTTTCGGCCAGTTCGCGATTCACGAAGACGATTCGGTTGCCGATTACAGCCTGAAGATTTTCGACACCACGCTGCACACCTTGATGGAAGTGCGTGAA
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MPFSFSAHDASDTSRRAIRKKFATRLRVERTRMLYQGSLLPTLFMFISGLVCAWLLWSPERYVLVSIWLVWLAVLVGLRVIQVAAFRAASPERQAQPVWR RMFLLGAVVSGLTLACAAMALVPVTSFEQQAWVFGMIGGATLCASVAYAVSLTAFLTFSLSCLLPPIVYLFMGGDVPLRGWGWLGLILLFALIVVAWQIN RLILRSLLQRFQNQALIEHLQQARAKGDELNEILGREVEQRRQAEHSLREAQAGLEERVAQRTLELEAANLALSKSPPRLAEKVFDAVSESIMIFDPQYR ILTINQAFSRLTGYTPEDVVGRQVMDIASSRDARRHFQAIHHALEQTGSWQGELVEARKNGELYPQWLQMTVVRDIAGNVSHIVGFFTDLSANRESEERM RYLTHFDELTGLANRSQFKERLREANQRVRQGGRSLALLHINLDRFKLLNESLGHEVADQLLKHVARRLISAMPEADTIARLSGDEFAVLFDAYANLSSL ARVTSRLLSKLRTPLSVAGNELVISASVGISLLPDSAREVSALVSQANMAMRHAKHLGGNNFQFFTESLRASTLERLQLEIQLRKAIEDHQLQVFYQPKM LLENGRLDAAEALVRWRHPTRGMVPPGEFIGLAEETGLIADIGEFVLRQACWQACEWQRQGFEPIRVSVNLSVHQLRQGKLVSLVRQVLDETGLAPHLLE LELTESQLLDSVEHIIATFQQLRELGVKLAIDDFGTGYSSLSYLKRFPVDYVKIDQAFIRGLDDGTEDAAITQAIIAMAHSLGLKVVAEGVENEKQLEFL KAQGCDEVQGYLISRPLEASMMEGMLSLARQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|