Pseudomonas cichorii JBC1, BH81_RS21815

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 555 671 0.00239182
SMART SM00086 pac_2 IPR001610 PAC motif 632 674 0.004
Pfam PF08447 PAS fold IPR013655 PAS fold-3 437 528 3.0E-8
CDD cd00130 PAS IPR000014 PAS domain 435 531 1.03475E-4
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 531 672 4.19E-16
SMART SM00086 pac_2 IPR001610 PAC motif 491 534 0.019
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 398 532 8.54E-16
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 686 802 8.3E-18
SMART SM00086 pac_2 IPR001610 PAC motif 754 796 2.7E-5
SMART SM00267 duf1_3 IPR000160 GGDEF domain 796 972 8.4E-68
Pfam PF13426 PAS domain IPR000014 PAS domain 694 795 3.0E-15
SMART SM00091 pas_2 IPR000014 PAS domain 413 483 0.026
Gene3D G3DSA:3.30.450.20 PAS domain - - 406 532 1.8E-16
CDD cd00130 PAS IPR000014 PAS domain 691 793 8.72574E-11
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 542 681 4.1E-11
SMART SM00091 pas_2 IPR000014 PAS domain 546 613 0.24
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 982 1238 1.8E-107
SMART SM00052 duf2_2 IPR001633 EAL domain 982 1228 6.8E-127
Gene3D G3DSA:3.30.450.20 PAS domain - - 684 807 3.0E-29
CDD cd01949 GGDEF IPR000160 GGDEF domain 808 970 3.28619E-62
SMART SM00086 pac_2 IPR001610 PAC motif 360 401 110.0
Pfam PF13426 PAS domain IPR000014 PAS domain 558 672 6.6E-7
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 983 1237 2.4E-103
Gene3D G3DSA:3.30.450.20 PAS domain - - 543 683 8.1E-21
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 812 973 2.12E-49
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 987 1234 3.01E-93
Pfam PF00563 EAL domain IPR001633 EAL domain 988 1223 3.8E-76
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 682 1233 0.0
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 808 978 5.9E-61
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 807 968 2.8E-50
SMART SM00091 pas_2 IPR000014 PAS domain 682 748 1.3E-6
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 802 973 5.7E-45
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 804 970 3.2E-41
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 409 540 4.4E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 241 405 1.1E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 694 804 1.39E-23
CDD cd01948 EAL IPR001633 EAL domain 988 1228 1.83522E-116
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 308 410 2.62E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.