Pseudomonas cichorii JBC1, BH81_RS10570

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas cichorii JBC1, complete genome. [Details]
DNA Sequence Upstream of Gene
GAAACCCTGCTGTACGCTGACTGGTCAGGGCAGAGCGCCTGGCAGGAAAAGCCCCTTGAATCGCGCCTGTATTCAAGTCGCCAGGCCGGTCAGCGACTGC CACTGGAAATCAAGCGCTTGCTCGATGAGCAGGTTTCCACCAATCGGGATCTGGGCAACGTTTACCTGCTGTGCCTGATCCTCGGTTTTCACGGGCACTT GCGTGGGGAGCGCGGTCAGGCGCTGCACGAAAAATGGCGTCACGCGCTGTTTACCTTCACCCGCCAGCGCGAGCCGGATTACGCCAACGTCAGCCAGTTG CTGGCCGAACCTTCCAGCGTCGCGCCGCGCCAGTTGCCGTTGCGTAAATCATTGCCTGACGGCTTGCGTCTGGGGCTGGTGATTCTGGCGTTCACACTGT TGTTTATCGGTATCGGTCAATTGTTCTGGCATGACATCGGCCAGCGTCTGGAGCCGGTTCTGCATCTGGCGACACCTTTTGTGGTTGTGGAGAACCTGTC
DNA Sequence for Gene
>BH81_RS10570
ATGACGCTGGCCATGCTGGGCTGGGTGATCGGCATCGTTGTCGTCCTGCTGATTGTGCTGTTGTGCATCGGGTGGCTGCGTACCCGTGGCGGTGCGGCGA TTCGCAGTTTCCATTTTGCCGTGCGCCAGATGGAGAAGGACCAGGGCGTGCGCGATCACTACCAGACTTCCTGGCTGTTGATGGTGGGCGATGAGGCTCA GGGCTCCCAGTTGTGCTCGGCCTGGAATCTTTCGCCAACGGACAAGCCCGCATGGTTTGGCCGTTGGTGGTCCGATCCCGAAGGCGCGGTGCTGGTTGTG CCGCAGTCGCTGTTCATGCCCGAAGAAGGCATGAAGCTTCAGGGTAACGGCTGGGCGAGCCTGCTGGGCCTGTTGCTGCGCATCCGTGGTCAGCGCCCGC TGGACGGGGTGATCTGGAACATCAGCGCAGCCGATCTTCTGGATGGCGAGCGTGCGGCCTCGCTTGGGCTGGCGGCGCGTCGGCGCTTTATCGATCTGCT GCAACGCCTTGGGCTCAGTGTGCCGGTGTATGTCGTGATCAACGGCATGGACGAGATTCCCGGCTTTCAGGATCTGGTCATGGCCTTGCCGCAGGACACC CGCCAGCAGATTCTGGGCTGGAGTTCGCCTTATGACCCGGAAATGGTCTGGCAATCCCAGTGGAGCGATACTGCGCTCGATTCCGTGGTGCAGGCACTTT CGGAAGCCATTGTTCAGGTGGGTGCGTTGTCGGGCCACTTGAGTGGTGAGCTGAGTTTCCTGCCCGAGCGTCTGAAGGATTTGCGCCGCTCTCTGCAAAT GCTGCTGGAGCCGGTCTTTCAGGGCAATGCCCAGGGCGAGGCGGTATGTTTTCGGGGGCTGTACTTCACCGCGGATCAGGCATCGGCTCCGGGTCATGAA ACTCTGTCGGCAACCGATGCGCCGCTCATGCAGAGCGTCTTCGCCTCAATGCTCTGGCAGCATCGCATCAATGCCGAGCGCGGCCTTGCGCAACCTGTGC CGCGCCTTTTGCATCTGCGTCGGCGCTGGCAGCGGGTCACGGCCATTGGTGCGCTGATCTTTGGCGTGATCTGGGTCATTTCCATGCTTTGGGTCTGGCG TTATTCGATCGATGAAGCCGACGAGCTGTCCCGCCTGTTGCAGGAAGCTCAGCGCAATTACGTGCAGGTCAACGATGACGCGCACCGTCAGGAACTGACC CGCAGCAATGTGCAGGCATTCTGGAATGTTCTGCAGAACGCGCCGCGTTGGCATTTCGCTTCTCCGGTTTATCCAAGCTCCTGGTTTTCCTCGCTGGATA CCCGTCTGGACGGGGTATTGCGGCACATGTCCATGAGCCACATGCGCCAGCCTTTGCATGACTTGCTGCTGGCCCAGACCAACGAATTGCTGGCGATCAC CGACAGTGACCGGCGCTCCGCTCAAGAGGGCGATGACCCAGCGCTATGGCAGAGTTACGTCAAAGCCAGGGATCTGGTAGAGCGGGCAACACGTCTGGAG CAGATGAGCAATCTGTACAGCCTGTCCTTCAGCAACCAGAAAACCCCGCTGGAAGAACTGGTGCCCCTGAGCAATAGCGCCTTGGGCCTGAATCTCAATG CGGGCACCTTGCATCGCGAGTCGTTCTACAACCGGCTGATGGTGGAGAAGGGCGCTTCATCTCTGCAACCGCTGGACCTTCTGGCTCATCGCAAGGAAGT GACCACCAACTTCACCAAGCTCATGGAGAAGTGGCTGGTTCAATATTACCGGGCGGACAACTTCATCACCGCCGCTGGTTATCTCAAGCTGCATCTGGAG CGTCTGGAGTCGAGTACCGAGAATGATCTTGAAGAACTGGAGCGCATCAAGGACCTGATTGACGATTTGCAGGCAGTCATCGACCTGACCAACGCCACCT GGAGCCGTGGCAAGGGGCAGGAACTGGTGCCTGGTTATCTGGCGATGATGGACAGTGTCAGGCAAAGCAAGTTGCTGGGGCCGCAGGTGGCCCAGGAGCT TGAAAGCCAGGCGGCCCAGTTGCAGCACAGTTTCAAGGGGCAATGGATCGCTCAGGGCGCCGCAAGCAATAGTCTGCTGACCCAGAGTGGCAGTGGGCAA CTGACCTTGCAGGAGCGGGTTTCGCAACTGCATGCGGCCATCAATTCGTTGCTGCGCCGCGACTTCGTGGCCAGCGCGTTGCGTCAGGACGGCCGTGGTG AAAACGGGCCGGCGCAGCATATCGATAACGACGGCCTGAGCATCGCCCTGAATCACTACAACAGCTACAAGCTGTATGCCCGTGAAGAACTGCCGAATAT TCCGGCCATGTATCGCCCGGCCATGTTGAGCACCGCCGAAGAGGCTGCCGCCGATTCCATGTGGTCGAGCCTGAGTACCCATGCGTCTTCGTCGGGATCT GAGGAGGACGCCCGGCTTTTCGATATCCGCACCGATCAGGCACTGGCGCTGCACAAGGCCTTTATCGAGCTCAAGCATCCCCAGCTCGCTATCAGCCTTC AGAACTACCTGAACCGGGTCGCACTGGCGGATATCTCGACGGCGACCGACATGGTGCTTGAACAACCGCTGTTCCGGGATCGTGCTGACATCAGTGAATG GGATGGCGGTAAGAACTTTGGTCTGCAATTGTTGCGAGCCACGGATGCCCAGGATCTCAAACGCGGTCTGGACCAGCAGTTCGCAGTGATCTCCAAGATC ACCGAGCAACATGCACCGGCCGTGGAATGGCTGAAGACTCAGTTGCAGAACCTGCCTATGGTCAGCGTCGAGGAAGTGACCCGGTTTGCCTCTCTGAGTG AGGAAATGAACAAGTACAAGGCGCAGAACCCGTCGAGTTCTCCAGCCTTGATCACTCAGTTGCTCAGTCGTGACTTCAACGACATGGACGAGAACACTTG CCTGGGCATCTTGCAGTCGGCCAATGTGCCGGTCAGTACCGGGCAGTTGACTCAGCGTTGGCTGACCTTGCAACAAGGGGCTCTGCGCCGTTGCCAGCTC TTGCAACAGCAGCAGGGCACCGCCGCCTGGAACGCACTGGCCAGTTACTTCAATCAATACCTGTCGGGGCGTTTCCCCTTCGCCCATGACTTGAGCGCGG CGGATGCCGACCCGGCGCGTGTTCAGCACTTCCTGACCCTGATCGACGAGCGATTGCCTCAGGCTCAGGACGGGCTCAAGAATGCCCAGTCCCGCGACCG CGCGGCGGCTGCCGAGTTTCTTGAACGCCTGAAGCTGGCCCGACCCTGGCTTGGTGCTCTGCTGCTGCGCGACAAGGCCGGTCTGGTGGGCGCGGACATG GAAATCCAGTGGCGCACCGATCGTGACAGTGAGCGTGGTGCCGATCAGGTCATCAGCTGGAAACTGGTTTCAGGGAACCGTGAAATCAGCTATCCGGGCC AGGCGCAGCAGGTCCTGCACTGGAATGTCGGTCAGCCGCTGAGCCTGATCCTGCGCTGGGCCCGGGATGGCACTCAGCGTCCGGTCAACGATCCATTGCA GCCCGACTTGCGTGTCAGCGGGCTGGAAGCCGAGTGGCAATACCTTGGGCCGTGGTCGTTGCTGCGCCTGATGAGCGCCCATGTGTCGGTGCAACGTCAG CCCAACGTCGATTACACGGAATTCCCGCTGTCGCTTGAAGTGCCGGTCCATGCGCCGGCCAATGAAGAAAACCAGACCCTGATGTTCGTGCGCCTGTCGT TGATGAGCCAGGGCGGCAAGGCCCCGTTGTCGATTCAACCCTTGCCGGTGCAGGCACCTCGCTCGCCATTCGGCTCGGCCCCTCGTTCTGTAGTTGATGC TGGAGTGTATCGATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCAGCTTTCGTCACGGGTCAGCGAACTGCTGGAGCCCCTGTTTGGTCACTCGCCCTGCGGCGTAAACCTGCGCCACGAGCCTATCTACGATCGCTTGCG ACAGTTGCGTCGCGAAGACGATGCAAGTTTGCCGATGGGCGTCTGGCAGGCGGACATCAAACGGGCCGACTGGGGGCAGGTGGAATCCATTGCGACCTCG GTACTGCTCAAGGAAAGCAAGGACCTGATGATCGCCGCCTGGCTGGGCGAAGCCTGGCTGCACAAGGATGCCAGGCCGGGAATCATTGATGCGTTGAGCC TGCTGATCGGCTTGTGCGAGCGCTATCCGCAGGAGTTGCACCCACAACCCGCCGATGGTGACTTGTCATGGCGAGCGACGCCCCTTGAGTGGATCGTGCG TCGCTATACCGAACTGCTGCGCACGCAATTCCAGTTGTTCGAGAGTCGGGAAGGCGAGTTTACCGGTTATGTTCTGAGTGACTGGCAGCAACTGCAACGC
Amino Acid Sequence
>type VI secretion system protein ImpL
MTLAMLGWVIGIVVVLLIVLLCIGWLRTRGGAAIRSFHFAVRQMEKDQGVRDHYQTSWLLMVGDEAQGSQLCSAWNLSPTDKPAWFGRWWSDPEGAVLVV PQSLFMPEEGMKLQGNGWASLLGLLLRIRGQRPLDGVIWNISAADLLDGERAASLGLAARRRFIDLLQRLGLSVPVYVVINGMDEIPGFQDLVMALPQDT RQQILGWSSPYDPEMVWQSQWSDTALDSVVQALSEAIVQVGALSGHLSGELSFLPERLKDLRRSLQMLLEPVFQGNAQGEAVCFRGLYFTADQASAPGHE TLSATDAPLMQSVFASMLWQHRINAERGLAQPVPRLLHLRRRWQRVTAIGALIFGVIWVISMLWVWRYSIDEADELSRLLQEAQRNYVQVNDDAHRQELT RSNVQAFWNVLQNAPRWHFASPVYPSSWFSSLDTRLDGVLRHMSMSHMRQPLHDLLLAQTNELLAITDSDRRSAQEGDDPALWQSYVKARDLVERATRLE QMSNLYSLSFSNQKTPLEELVPLSNSALGLNLNAGTLHRESFYNRLMVEKGASSLQPLDLLAHRKEVTTNFTKLMEKWLVQYYRADNFITAAGYLKLHLE RLESSTENDLEELERIKDLIDDLQAVIDLTNATWSRGKGQELVPGYLAMMDSVRQSKLLGPQVAQELESQAAQLQHSFKGQWIAQGAASNSLLTQSGSGQ LTLQERVSQLHAAINSLLRRDFVASALRQDGRGENGPAQHIDNDGLSIALNHYNSYKLYAREELPNIPAMYRPAMLSTAEEAAADSMWSSLSTHASSSGS EEDARLFDIRTDQALALHKAFIELKHPQLAISLQNYLNRVALADISTATDMVLEQPLFRDRADISEWDGGKNFGLQLLRATDAQDLKRGLDQQFAVISKI TEQHAPAVEWLKTQLQNLPMVSVEEVTRFASLSEEMNKYKAQNPSSSPALITQLLSRDFNDMDENTCLGILQSANVPVSTGQLTQRWLTLQQGALRRCQL LQQQQGTAAWNALASYFNQYLSGRFPFAHDLSAADADPARVQHFLTLIDERLPQAQDGLKNAQSRDRAAAAEFLERLKLARPWLGALLLRDKAGLVGADM EIQWRTDRDSERGADQVISWKLVSGNREISYPGQAQQVLHWNVGQPLSLILRWARDGTQRPVNDPLQPDLRVSGLEAEWQYLGPWSLLRLMSAHVSVQRQ PNVDYTEFPLSLEVPVHAPANEENQTLMFVRLSLMSQGGKAPLSIQPLPVQAPRSPFGSAPRSVVDAGVYR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site