Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS21115

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain UFB2, complete genome. [Details]
DNA Sequence Upstream of Gene
CCGGCGACAACGCCGCCGCGGTCAAGCTGACCCTGGAAGACGGCAGCCAGTATCCACACGAGGGTAAGCTGGAGTTCTCCGAAGTGTCGGTCGACCAGAC CACCGGCTCGGTGACCTTGCGCGCCGTGTTCCCCAACCCTGACCACACCCTGCTGCCGGGCATGTTCGTCCACGCGCAGTTGCAGGCTGGTGTGAACAGC GCCGCGATCCTCGCCCCGCAACAAGGCGTGACCCGCGACCTAAAGGGCACGCCAACCGCATTGGTGGTGGGCCCGGACAACAAGGTCGAGCTGCGCCAGC TCAAGGCCACCCGCACCGTCGGCAGCCAGTGGCTGGTCGAAGACGGCCTCAAGGCCGGCGATCGCCTGATCACCGAAGGCCTGCAATTCATACGGCCAGG GGTGGAAGTCAAGGTCGCCGAAGCCACCAACGTCGCCAACAAGAACCCGGCCCCCGCTCAGGCAGCTGATAAAGCAGCCGGCGGCAAAGGGGAGTAAACC
DNA Sequence for Gene
>VM99_RS21115
ATGTCGAAATTCTTTATCGACCGTCCGATTTTCGCCTGGGTAATCGCCCTGGTGATCATGCTGGTCGGGGCCTTGTCGATCCTCAAGTTGCCGATCAACC AATACCCGAGCATCGCCCCGCCGGCCATTGCGATCCAGGTGACCTACCCGGGTGCGTCCGCGCAGACCGTGCAGGACACCGTGGTGCAGGTCATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGTTATGTGTCCTCGGAAAGTAACTCCGACGGCAGCATGACCATCACGGCGACCTTCGAGCAAGGCACCAACTCC GACACCGCGCAGGTCCAGGTCCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCCCAAGAAGTGCAGCAACAGGGCATCCGCGTGACCAAGTCGGTGC GCAACTTCCTGATGGTGATCGGCGTGGTGTCGCGCGACGGCGGCATGACCCGTGAGGACTTGTCCAACTACATCGTGTCGAACATGCAGGACCCGATCTC GCGGACCGCCGGTGTTGGTGACTTCCAGGTCTTCGGTGCCCAGTACGCGATGCGGATCTGGCTCGACCCGGCCAAGCTGAACAACTTCAACCTGACCCCG GTGGACGTGCGCACGGCGATTGCCGCGCAGAACGTCCAAGTCTCGTCCGGCCAGCTCGGCGGCCTACCCGCCCTGCCCGGCCAGCAGTTGAACGCCACGA TCATCGGCAAGACCCGCCTGCAGACCGCCGAGCAGTTCAAGAACATCCTGCTCAAGGTCAACCCGGACGGCTCGCAGGTGCGCGTCGGCGACGTCGCCGA CGTCGGCCTGGGCGGAGAGAACTACAGCATCAACGCCCAGTTCAACGGTGCCCCGGCTTCCGGTCTGGCCGTGCGGCTGGCCACCGGTGCCAACGCCCTC GACACGGCCAAGGCCCTGCGCAAGACCGTGGATGACCTCAAGCCGTTCTTCCCGCCAGGCATGGAAGTGGTGTTCCCCTACGACACCACGCCGGTGGTGA GCGAGTCGATCAAGGGCGTGGTTGAAACCCTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCCACCATCAT CACCACGATGACGGTGCCGGTGGTGTTGCTCGGTACGTTCGGCATCCTCGCGGCGTTCGGTTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAGAACGTCGAGCGGGTGATGAGCGAGGAAGGCCTGTCGCCCAAGGAGGCCACCAAGAAGT CCATGGGCCAGATCCAAGGTGCCCTGGTGGGTATCGCCCTGGTGCTGTCGGCGGTATTGCTGCCCATGGCGTTCTTCGGTGGTTCCACCGGTGTGATCTA CAAGCAGTTCTCCATCACCATCGTCTCGGCCATGGCCTTGTCGGTGCTGGTCGCACTGATCTTCACCCCGGCCCTGTGCGCCACCATGCTCAAGGCGATT CCCAAAGGTGAGCACGGTACGCCCAAGCGCGGTTTCTTCGGCTGGTTCAACCGCACGTTCGACCGTGGCGTCAGGAGCTACGAGCGCGGCGTGGGCAACA TGCTCAGGCACAAGGCCCCGTTCCTGCTGGCCTACCTGATCATCGTGGTCGGCATGGTCTGGCTGTTCACCCGCATCCCGACCGCCTTCCTGCCGGAAGA AGACCAGGGCGTGCTGTTTGCCCAGGTGCAGACCCCGGCCGGTTCCAGCGCCGAGCGTACCCAGGTGGTGGTGGACAACATGCGTGAATTCCTGCTGCGT CCGGGCAAGGACGGCGGCGAAGGCGATGGCGTGGCCTCGGTGTTTACCGTGACCGGCTTCAACTTCGCCGGTCGTGGCCAGAGCTCCGGCCTGGCGTTCA TCATGCTCAAGCCGTGGGAAGAACGTAACGCCGACAACACCGTGTTCAAGATCTCGGCCCGTGCCCAGCAACACTTCTTCACCTTCCGCGACGCGATGGT GTTCGCCTTCGCCCCGCCGGCGGTGATGGAGTTGGGTAACGCCACCGGTTTCGACGTGTTCCTGCAGGACCGCGCCGGTATTGGTCACGAGAAACTGATG GAAGCCCGCAACCAGTTCCTGGGCATGGCGTCCCAGAGCAAGGTCCTGGCCCAGGTACGTCCCAACGGCCTGAACGACGAACCGCAGTACCAACTGGAAA TCGATGACGAAAAAGCCAGCGCGCTGGGCATCACCCTGTCGGACATCAACAACACCCTGTCGATTGCCCTGGGCAGTAGCTACGTCAACGACTTCATCGA CCGTGGTCGGGTGAAGAAGGTGTACGTGCAAGGCCAGCCAGGCGCGCGCATGAACCCCGAGGACCTGAAAAAGTGGTATGTGCGCAACAGCGCCGGGACC ATGGTGCCGTTCAGCGCCTTCGCCAAGGGTGAGTGGGTCTTCGGTTCGCCGAAACTGGCCCGCTACAACGGCGTGGAAGCGATGGAGATCCTCGGCTCGC CAGCGCCCGGTTATTCCACCGGTGAAGCCATGGCCGAAGTCGAGGCCATCGCCAAGAAGCTGCCATCCGGCGTGGGGATTTCCTGGACAGGCCTGTCCTA CGAGGAACGCTTGTCCGGTTCCCAGGCTCCGGCCTTGTACGCCCTGTCGCTGCTGATGGTGTTCCTGTGCCTGGCGGCCCTGTATGAAAGCTGGTCGATT CCGATCGCGGTCATGCTCGTGGTGCCGTTGGGGATCATCGGTGCTCTGCTGGCGACCAGCCTGCGCGGCCTGTCCAACGACGTGTACTTCCAGGTGGGGC TGCTGACCACCATCGGCCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGAACTCCACGAACAGGGTCGCAGCTTGATGGATGCCGCCAT TGAAGCTTGTCGGATGCGTCTGCGACCGATCATCATGACGTCCCTGGCGTTCGTCCTCGGTGTGGTCCCGCTGGCGATTTCCACGGGCGCTGGCTCGGGC AGCCAGCACGCCATCGGTACCGGTGTGATCGGCGGCATGTTGACCGCCACCGTCCTGGCGATTTTCTGGGTGCCGTTGTTCTTTGTGACCGTGTCGTCGA TAGGCCGCCGCAAACAGGCCGACCAGGACGATACTCCTGAAACTTCTAAAGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCGCTACTCTCCCTGACCATCGCTGCCGTCGTGCTCAGCGGTTGCTCGCTGATCCCCGACTATCAGCGACCCGAAGCACCGGTCGCGTCGCAATA CCCGCAGGGGCCGGCCTACGAGGCGGCCAATGCCCCCGGCCAGGCCGCCGCCGAGCAAGGCTGGAAGCAGTTCTTCCATGACCCGGCGTTGCAGCAACTG ATCCAGGTGGCCCTGGAAAACAACCGCGACCTGCGGGTCGCGGCGCTGAACATCGATGCCTACGCCGCGCAGTACCGCATCCAGCGGGCGGACCTGTTCC CGGCGGTCTCGGCCACCGGCTCGGGCAGCCGCCAGCGGGTGCCGGCACGGGCGTCGCAGACCGGTGAAGCGTCCATCAGCAGTTCGTATTCGGCCACCCT GGGCGTCAGCGCCTATGAACTGGACCTGTTCGGTCGGGTTCGCAGCCTGAGCGAACAAGCATTGCAGAGCTACTTCGCCACCGAAGAAGCCCGCCGCAGT
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKSVRNFLMVIGVVSRDGGMTREDLSNYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVRTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRLQTAEQFKNILLKVNPDGSQVRVGDVADVGLGGENYSINAQFNGAPASGLAVRLATGANAL DTAKALRKTVDDLKPFFPPGMEVVFPYDTTPVVSESIKGVVETLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAI PKGEHGTPKRGFFGWFNRTFDRGVRSYERGVGNMLRHKAPFLLAYLIIVVGMVWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDNMREFLLR PGKDGGEGDGVASVFTVTGFNFAGRGQSSGLAFIMLKPWEERNADNTVFKISARAQQHFFTFRDAMVFAFAPPAVMELGNATGFDVFLQDRAGIGHEKLM EARNQFLGMASQSKVLAQVRPNGLNDEPQYQLEIDDEKASALGITLSDINNTLSIALGSSYVNDFIDRGRVKKVYVQGQPGARMNPEDLKKWYVRNSAGT MVPFSAFAKGEWVFGSPKLARYNGVEAMEILGSPAPGYSTGEAMAEVEAIAKKLPSGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSI PIAVMLVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGRSLMDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSG SQHAIGTGVIGGMLTATVLAIFWVPLFFVTVSSIGRRKQADQDDTPETSKEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site