Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS21115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF00873
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00873
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00873
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0015562 | efflux transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0042908 | xenobiotic transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:1.20.1640.10:FF:000001 | Efflux pump membrane transporter | - | - | 323 | 510 | 3.5E-73 |
| SUPERFAMILY | SSF82693 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains | - | - | 567 | 675 | 1.57E-26 |
| SUPERFAMILY | SSF82693 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains | - | - | 135 | 330 | 4.97E-25 |
| PRINTS | PR00702 | Acriflavin resistance protein family signature | IPR001036 | Acriflavin resistance protein | 554 | 571 | 3.7E-102 |
| Gene3D | G3DSA:3.30.70.1440 | Multidrug efflux transporter AcrB pore domain | - | - | 678 | 876 | 0.0 |
| Gene3D | G3DSA:3.30.70.1430 | Multidrug efflux transporter AcrB pore domain | - | - | 572 | 677 | 0.0 |
| PANTHER | PTHR32063 | - | IPR001036 | Acriflavin resistance protein | 2 | 1043 | 0.0 |
| SUPERFAMILY | SSF82714 | Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | IPR027463 | Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains | 728 | 814 | 4.19E-24 |
| PRINTS | PR00702 | Acriflavin resistance protein family signature | IPR001036 | Acriflavin resistance protein | 391 | 415 | 3.7E-102 |
| PRINTS | PR00702 | Acriflavin resistance protein family signature | IPR001036 | Acriflavin resistance protein | 8 | 32 | 3.7E-102 |
| FunFam | G3DSA:3.30.2090.10:FF:000001 | Efflux pump membrane transporter | - | - | 180 | 278 | 8.9E-42 |
| PRINTS | PR00702 | Acriflavin resistance protein family signature | IPR001036 | Acriflavin resistance protein | 445 | 468 | 3.7E-102 |
| Gene3D | G3DSA:3.30.2090.10 | Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | IPR027463 | Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains | 180 | 278 | 0.0 |
| Gene3D | G3DSA:3.30.70.1430 | Multidrug efflux transporter AcrB pore domain | - | - | 38 | 826 | 0.0 |
| PRINTS | PR00702 | Acriflavin resistance protein family signature | IPR001036 | Acriflavin resistance protein | 470 | 493 | 3.7E-102 |
| FunFam | G3DSA:3.30.70.1430:FF:000002 | Efflux pump membrane transporter | - | - | 572 | 677 | 9.5E-32 |
| Gene3D | G3DSA:3.30.70.1320 | Multidrug efflux transporter AcrB pore domain like | - | - | 133 | 331 | 0.0 |
| Gene3D | G3DSA:3.30.2090.10 | Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | IPR027463 | Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains | 730 | 818 | 0.0 |
| SUPERFAMILY | SSF82866 | Multidrug efflux transporter AcrB transmembrane domain | - | - | 812 | 1031 | 1.57E-46 |
| PRINTS | PR00702 | Acriflavin resistance protein family signature | IPR001036 | Acriflavin resistance protein | 363 | 384 | 3.7E-102 |
| FunFam | G3DSA:3.30.2090.10:FF:000002 | Efflux pump membrane transporter | - | - | 730 | 818 | 1.1E-40 |
| FunFam | G3DSA:1.20.1640.10:FF:000002 | Efflux pump membrane transporter | - | - | 864 | 1028 | 3.1E-78 |
| SUPERFAMILY | SSF82693 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains | - | - | 38 | 130 | 1.96E-27 |
| Gene3D | G3DSA:1.20.1640.10 | Multidrug efflux transporter AcrB transmembrane domain | - | - | 7 | 517 | 0.0 |
| Gene3D | G3DSA:1.20.1640.10 | Multidrug efflux transporter AcrB transmembrane domain | - | - | 518 | 1028 | 0.0 |
| NCBIfam | TIGR00915 | JCVI: efflux RND transporter permease subunit | IPR004764 | Multidrug resistance protein MdtF-like | 1 | 1050 | 0.0 |
| SUPERFAMILY | SSF82714 | Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | IPR027463 | Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains | 182 | 271 | 5.75E-21 |
| PRINTS | PR00702 | Acriflavin resistance protein family signature | IPR001036 | Acriflavin resistance protein | 36 | 54 | 3.7E-102 |
| Pfam | PF00873 | AcrB/AcrD/AcrF family | IPR001036 | Acriflavin resistance protein | 1 | 1031 | 0.0 |
| FunFam | G3DSA:3.30.70.1430:FF:000001 | Efflux pump membrane transporter | - | - | 38 | 139 | 8.8E-34 |
| SUPERFAMILY | SSF82866 | Multidrug efflux transporter AcrB transmembrane domain | - | - | 296 | 497 | 5.49E-49 |
| PRINTS | PR00702 | Acriflavin resistance protein family signature | IPR001036 | Acriflavin resistance protein | 336 | 359 | 3.7E-102 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.