Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
ACGCCCTGCTGGCCGGCGAAGCGGCCAAGGCCAAGAAGGCCGACGACTGGGCCGTCACCGGTACACCACAGTCCTACGAGATCTACGGCTGCATGATGCG CAAGGGCGACGAGCCGTTCAAGAAAGCGGTCGACGACGCCATCAAGGCGACCTATGCCTCGGGCGAGATCAACAAGATCTACGACAAGTGGTTCACCCAG CCCATCCCACCGAAAAACCTGAACCTGAACTTCCCGATGAGCGATGAGCTCAAGGCATTGATCGCCAATCCGACCGACAAAGCGGCTGACGACAAGAAGT CCTGATTTTTCTGACTAACCTTATCTCCTGAAGGGGCCCCGCCCTTTCAGGGGATGGTCACTCCCTGCTGGCATATCTGGAAACACTCGAGGCGGTGGTT GTCGAGCCGATCGCGTGTGCCTGGCCTTTACAGGCCAGGACGGGAACGGAGCTTCCCCAGGCGGGCATTTGCACATCGAACGATCTGAGGGGAGACCCTA
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DNA Sequence for Gene |
>VM99_RS11500
ATGAATTACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGCGTGGGCAGCGAGACTTATCTCGACTGGTACATCGCCGGCCTGGGCTGGACCATCG CCATCGCCGTCGTCGCCTGGATCATCGCCCTGATGCTGGGCTCTATCCTGGGCGTGATGCGCACCGTGCCGAACCGGCTGGTGTCGGGCATCGCCACCTG CTACGTGGAGCTTTTCCGCAACGTGCCGCTGCTGGTTCAGCTGTTCATCTGGTACTTCCTGGTGCCCGACCTGCTGCCCGAAAACCTGCAGGAGTGGTAC AAGCAGGACCTGAACCCGACCACCTCGGCCTACCTGAGCGTCGTCGTGTGCCTGGGGCTGTTTACCGCCGCCCGGGTCTGCGAACAGGTGCGCACCGGTA TCCAGGCGCTGCCGCGCGGCCAGGAATCCGCTGCCCGCGCCATGGGCTTCAAGCTGCCGCAGATCTACTGGAACGTGCTGCTGCCCCAGGCGTATCGGAT CATCATTCCGCCGCTGACCTCGGAATTCCTCAACGTCTTCAAGAACTCCTCCGTGGCCTCGCTGATCGGCCTGATGGAATTGCTCGCGCAGACCAAGCAG ACCGCCGAGTTCTCCGCCAACCTGTTCGAAGCCTTTACCCTGGCGACGCTGATCTACTTCACCTTGAACATGAGCCTGATGCTGCTCATGCGCATGGTCG AGAAGAAAGTCGCGGTGCCCGGCCTGATCTCCGTGGGGGGTAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGGAATTCGATTTCAGCGGTGTCGTCCCGGCCATTCCCGGCCTGTGGAATGGCATGGTGATGACCTTGAAACTGATGGCCCTGGGTGTCGTCGGCGGGAT CATCCTGGGGACGATCCTGGCGTTGATGCGCCTGTCCCACAACAAACTGATCTCCAACATCGCCGGCGCGTACGTCAACTACTTCCGCTCGATCCCGCTG CTGCTGGTCATCACCTGGTTCTACCTGGCGGTGCCGTTCGTGCTGCGCTGGATCACCGGCGAAGACACGCCGATCGGGGCCTTCGGCTCCTGCGTCGTGG CCTTCATGATGTTCGAGGCGGCGTACTTCTGCGAAATCGTGCGCGCCGGCGTGCAGTCGATCCCCAAGGGCCAGATGGGTGCGGCCCAGGCCCTGGGCAT GAACTATGGCCAGACCATGCGCCTGATCATCCTGCCCCAGGCGTTCCGCAAGATGACCCCGCTGCTGCTGCAGCAGAGCATCATCCTGTTTCAGGACACC
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Amino Acid Sequence |
>amino acid ABC transporter permease
MNYNWDWGVFFKSTGVGSETYLDWYIAGLGWTIAIAVVAWIIALMLGSILGVMRTVPNRLVSGIATCYVELFRNVPLLVQLFIWYFLVPDLLPENLQEWY KQDLNPTTSAYLSVVVCLGLFTAARVCEQVRTGIQALPRGQESAARAMGFKLPQIYWNVLLPQAYRIIIPPLTSEFLNVFKNSSVASLIGLMELLAQTKQ TAEFSANLFEAFTLATLIYFTLNMSLMLLMRMVEKKVAVPGLISVGGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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