Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS04860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain UFB2, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCGGCTGCCGCCTGGGCGTTCTGCTGCACCGGGAACAGCGCCGGCTCCTGGCTCCAATACCAACCCAGGGCGATGGTCACCAGCAGGTACAGGCCGAC CAGCGTCGCCAGTGCCCGACTGAACAACAGCCCACCCAGGTAGCTGCGGGTGTCCGATTTCGGTTCGGCGGCACGTTCAGGCGCGCTGCCCGCGCGGTTT TTCCAGTCCAGCATGGCGATATCCCTTCAATCACTTGAGTTCTCGGTTCGACCACAACCCTACGCCATCGTGCCTGATTTGAAACGCGATAATGTGGCGG CCAATCAGGCCTGCCCTGGCAGGGTCGTCGAGCAGCCACTATAAATGAAGCGCCGCCGTCGGTCTTCGAAACTGGCCGGTCATTAACTGAATGTCGCGGT TGGACAGATTATTGACGTATGACACTGATGCAAGGGAAAAGAGGTGCTAGCATAGAGCCACCAGTCGACCTCAGCATGCAGCCTAACTAGTAGTCAGGAT
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| DNA Sequence for Gene |
>VM99_RS04860
ATGACCGAGCCAGAAGACCCCAGCCGCGAGCGCCTCAAGCATCACTTTGCCCAGCGGGTAATTCACCAGGCTCGTCAGATCCTGGAGATCTGGCAGCGCC TGCAGCGCAGCGAGTGGTCCAGCACCGATCTTTCCGAGCTCAGCGAAGCCAATCTGCGGCTGCTGCGTTTTGCCGAACGCTTCGAACAACCCGAACACAC CCAGCTCGCCCAAGGCATCAGTCAGTCGTTGCAGGCAGTGGATGCCAACCGCGGACGCCTGAGCAGCCACCTGATCACCGAAATCAACCGCCTGATGCAG CGCCTGTCGCGCACCGGCCTGCGCCATGGCGACCAACTCGAACAGACCTTCCTGCCGCCGCTGCGCAAACCCATCTATGTACTGCTGCAAGACCACGACC GCGCCGAGCGCCTGGCCAAGCAATTGGAATTCTTCGGTCTCAGTGCCCAGGCCCTGGACAGCGTCGCGGCATTTCGGGCGACGATGGTCGAGCGCCTGCC GGCGGCGATTGTCATGGACGTGGATTTCAGCGGCCCCGGCGCCGGCCTGAAACTGGCCGCCGAAGCCCAGGAAGGCCTGGACCAGCCGCTGCCGCTGCTG TTCTTCAGTTTGCTGGAAACCGACACGCCGACCCGCCTGGCGGCCGTGCGGGCCGGCGGGCAGGAGTTCCTCACCGGCACGCTCGAAGCGTCGAGCCTGC TGGAAAAAATCGAAGTGCTGACCTGCGTCGCCCAGTACGAGCCCTACAAAGTGCTGATCATCGATGACTCCCGCGCCCAGGCCCTGCACACCGAACGCCT GCTCAACAGTGCCGGCATCGTCACCCGCACGCTGATCGAGCCGATCCAGGCCATGGCCGAGCTGGCGGACTTCCAGCCCGACCTGATCATCCTCGACATG TACATGCCCGCCTGCACCGGCACCGAGTTGGCCAAGGTGATCCGCCACAACGACCGCTACGTCAGCGTGCCGATCATCTACCTGTCCGCCGAAGACGACC TGGACAAGCAGCTCGATGCCATGAGCGAAGGCGGCGACGACTTCCTGACCAAACCGATCAAGCCCCGCCACCTGATCACCACCGTGCGCAACCGCGCGGC ACGGGCGCGCAACCTCAAGGCGCGGATGGTGCGCGACAGCCTTACCGGGCTGTACAACCACACGCACATCCTGCAGTTGCTCGAAGATTGCAGTTTCCGC GCCCGCCGGGAAGGCAAGCCGCTGAGTTTCGCCATGCTCGACATCGACCACTTCAAGCGGGTCAATGACAGCCATGGCCACCCCATGGGCGACCGGGTGA TCAAGAGCCTGGCGCTGTTTCTCAAGCAGCGTCTGCGCAAGACCGATTTCATCGGCCGCTACGGGGGCGAAGAGTTCGCCATCGTCATGCCCGACACCGA CATCGAGGCGGCCTGCAAGGTGCTGGATGAAATCCGCCAGCGCTTTGCCGAAATCCACTACCCGGCCCAGCCCCACGACTTGTGGTGCACCTTCAGCGCC GGCGTGGTGGAGATGAGCGATGACTCCGACAGCCTGATGATGGCGAGCCAGGCGGACGAGGCGCTGTACCGGGCCAAGCACGCCGGACGCAACCGCGTGC AGGCGGCCAGGCAAAGTGCCACTTTTTCATCGGAATCCACCGATTCGGTCATAAACCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCAAACGCAATAACTTCAAGCACTTACGATTCTGCCCTTGGTAGACCCTTGATGCGCCTGAAGCTGCTGACCAATCTCAATACCCTTCTTTTAGTTGCT GTGTGCCTGGGCCTGGGTGCCACGTTGTGGTGGTCGCAGATCGCCCTGGAGCGACCCTATCTGTTGATGGAGCGTTACCTGGGCCTGTCGCGGCAGTTTC AGGGCGAGGTGACACGCAACATCGAGGAGTACCTGAACAGCGGCGATGCCTTGCGCCTGAGCGCCGCGACCCAGGCCTTGGAAACCCTGCAAAAGGAACT CGATGCGTTCCCGCCGGAGCTGGCCCAGACCCTGCGCCCGAGCCTGTCCAACCTCGACAGCTTCAGCAAGACCGACCTGCTGGGCGCCGGCAAGCTGGCC GGCGACCCCCAGGCCCTGTTGCTCCAGGCCGAACGTGAATTGAGCGCCAACCTCGACCAGCTCGCCCGATACGCCCAAGGCGCGCCCGCCTACCTGCCAC
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| Amino Acid Sequence |
>diguanylate cyclase
MTEPEDPSRERLKHHFAQRVIHQARQILEIWQRLQRSEWSSTDLSELSEANLRLLRFAERFEQPEHTQLAQGISQSLQAVDANRGRLSSHLITEINRLMQ RLSRTGLRHGDQLEQTFLPPLRKPIYVLLQDHDRAERLAKQLEFFGLSAQALDSVAAFRATMVERLPAAIVMDVDFSGPGAGLKLAAEAQEGLDQPLPLL FFSLLETDTPTRLAAVRAGGQEFLTGTLEASSLLEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRTLIEPIQAMAELADFQPDLIILDM YMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNRAARARNLKARMVRDSLTGLYNHTHILQLLEDCSFR ARREGKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPDTDIEAACKVLDEIRQRFAEIHYPAQPHDLWCTFSA GVVEMSDDSDSLMMASQADEALYRAKHAGRNRVQAARQSATFSSESTDSVINL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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