Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS04860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0000160 | phosphorelay signal transduction system |
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd00156 | REC | - | - | 252 | 352 | 7.32717E-24 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 375 | 542 | 2.0E-52 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 365 | 536 | 1.8E-54 |
| Gene3D | G3DSA:3.40.50.2300 | - | - | - | 111 | 240 | 7.3E-6 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 371 | 537 | 3.5E-49 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 81 | 538 | 4.0E-87 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 378 | 534 | 3.08698E-59 |
| Gene3D | G3DSA:3.40.50.2300 | - | - | - | 241 | 374 | 9.6E-28 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 373 | 536 | 4.0E-45 |
| SMART | SM00448 | REC_2 | IPR001789 | Signal transduction response regulator, receiver domain | 249 | 362 | 3.3E-27 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 381 | 535 | 7.22E-47 |
| Pfam | PF00072 | Response regulator receiver domain | IPR001789 | Signal transduction response regulator, receiver domain | 251 | 362 | 9.6E-22 |
| SUPERFAMILY | SSF52172 | CheY-like | IPR011006 | CheY-like superfamily | 247 | 378 | 2.56E-30 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 378 | 532 | 5.6E-40 |
| SMART | SM00448 | REC_2 | IPR001789 | Signal transduction response regulator, receiver domain | 125 | 237 | 0.059 |
| SUPERFAMILY | SSF52172 | CheY-like | IPR011006 | CheY-like superfamily | 131 | 240 | 8.97E-6 |
| FunFam | G3DSA:3.40.50.2300:FF:000346 | Diguanylate cyclase response regulator | - | - | 246 | 374 | 1.2E-56 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.