Pseudomonas chlororaphis PCL1606, PCL1606_RS23190

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain PCL1606, complete genome. [Details]
DNA Sequence Upstream of Gene
CCGGCGACAACGCCGCCAAGGTCAAGCTGACCCTGGAAGACGGCAGCCAGTACAAACTCGACGGCAAGCTGGAATTCTCCGAAGTGTCGGTCGACGAAAC CACTGGCTCGGTGACCCTGCGCGCCGTGTTCCCGAACCCGGACCACACCCTGCTGCCAGGCATGTTCGTGCATGCGCAACTGCAGGCCGGCGTGAATGCC GCGGCGATCCTTGCCCCGCAACAAGGCGTGACCCGTGACCTCAAAGGCACCCCGACCGCGCTGGTGGTGGGCCCGGACAACAAGGTTGAACTGCGTCAGC TCAAGGCCAGCCGTACCGTCGGCAACCAGTGGCTGATCGAGGACGGCCTGAAGGCCGGTGATCGCGTGATCACCGAAGGGCTGCAATTCGTCAGACCTGG CGTCGAAGTAAAAGCCAGCGAGGCGACCAACGTTTCAGCGAAAAACCCGGCCCCTGCACAGGCGACTGACAAAGCCGCAGGCGGCAAAGGGGAGTAAACC
DNA Sequence for Gene
>PCL1606_RS23190
ATGTCGAAATTCTTTATCGACCGTCCGATCTTCGCCTGGGTAATCGCCCTGGTGATCATGCTGGTCGGGGCTCTATCGATCCTCAAGTTGCCGATCAACC AGTACCCGAGCATCGCGCCTCCGGCGATCGCCATCTCCGTGACCTACCCAGGCGCTTCCGCACAGACCGTGCAGGACACCGTGGTCCAGGTCATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGTTATGTGTCTTCGGAAAGTAACTCCGATGGCAGCATGACCATCACCGCGACCTTCGAGCAAGGCACCAACTCG GACACCGCGCAGGTCCAGGTACAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAACAGGGTATCCGCGTGACCAAGGCGGTGA AGAACTTCCTGCTGGTGATCGGCGTGGTTTCCGAGGACGGCAGCATGTCCAAGGACGACCTCTCGAACTACATCGTGTCCAACATGCAGGACCCGATCTC GCGAACCGCGGGCGTGGGTGACTTCCAGGTGTTCGGTGCCCAGTACGCCATGCGTATCTGGCTCGACCCGGCCAAGCTGAACAACTTCAACCTGACCCCG GTCGACGTGAGGACCGCCGTGGCGGCCCAGAACGTCCAGGTGTCGTCCGGCCAGATCGGTGGCCTGCCAGCCCTGCCGGGCCAGCAACTGAACGCCACCA TCATCGGCAAGACCCGCCTGCAGACTGCCGAGCAGTTCAAGGCGATCCTGCTCAAGGTCAACGCCGACGGCTCGCAAGTGCGCCTGGGCGATGTCGCGGA TGTGGCCCTGGGGGGTGAAAACTACTCGGTCAGCGCCCAGTTCAACGGTGCCCCGGCTTCCGGCCTGGCAGTGAAACTGGCCAACGGCGCCAACGCCCTG GATACCGCCAAGGCCCTGCGCAAGACCATCAGCGACCTGGAGCCGTTCTTCCCGCAAGGGATGAAAGTTGTGTTCCCGTACGACACCACCCCGGTGGTGA CCGAATCGATCAAGGGTGTGGTTGAAACCCTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCCACCGTCAT CACCACCATGACCGTTCCGGTGGTGCTGCTGGGGACCTTCGGTATCCTCGCGGCCGCCGGCTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGCTTGCTGGTGGACGATGCCATCGTCGTGGTGGAGAACGTCGAACGGGTCATGGCCGAGGAAGGCCTGTCGCCCAAGGAAGCGACCAAGAAGT CCATGGGCCAGATCCAGGGCGCCCTGGTCGGTATTGCCCTGGTGCTGTCGGCGGTACTGCTGCCGATGGCGTTCTTCAGCGGTTCCACCGGCGTGATCTA CAAGCAGTTCTCGATCACAGTGGTCTCGGCCATGGCCCTGTCGGTACTGGTCGCGCTGATCTTCACCCCGGCCCTGTGCGCCACCATGCTCAAGGCCATT CCCCATGGCGAGCACGCCGCGCCGAAAAAAGGTTTCTTCGGCTGGTTCAACCGTAACTTCGACCGCAGCGTCAGAAGCTACGAACGTGGCGTGGGCAACA TCCTGCGTCACAAGGCGCCTTACCTGCTGGCCTACGTGCTGATCGTGGTCGGCATGATCTGGCTGTTCACCCGCATTCCGTCCGCGTTCCTGCCGGAAGA AGACCAGGGCGTACTGTTCGCCCAGGTGCAGACTCCAGCCGGCTCCAGCGCCGAGCGGACCCAGGTGGTAATCGACGAAATGCGCGCCTACCTGCTGGAC AAGGAAAAGGACACCGTGGCCTCGGTCTTCACCGTGAACGGCTTCAACTTCGCCGGTCGCGGCCAGAGCTCGGGCATGGCCTTCATCATGCTCAAGCCAT GGGGCGAACGCTCCGCCGAAAACAACGTGTTCAACCTGGCCGCCCGCGCCCAGCAGCACTTCTTCAGCTTCCGCGACGCGATGGTGTTCGCCTTCGCGCC ACCGGCGGTACTGGAGCTGGGTAACGCCACCGGTTTCGACGTGTTCCTGCAGGACCGCGCCGGTATCGGCCACGAGAAGCTGATGGAAGCGCGCAACCAG TTCCTTGGCATGGCGGCACAGAGCAAGATCCTGTCCCAGGTCCGTCCGAACGGCCTGAACGATGAACCGCAGTACCAGCTGGAAATCGACGACGAGAAGG CCAGCGCCCTGGGCGTGACCATCTCCGACATCAACAACACCCTGTCGATTGCCCTGGGCAGTAGCTACGTCAACGACTTCATCGACCGCGGCCGGGTGAA GAAGGTGTACATCCAGGGTCAGCCCGGCGCTCGCATGAGTCCGGAAGACCTGAAGAAGTGGTACGTACGCAACAGCGCCGGGACCATGGTGCCGTTCTCC TCCTTCGCCAAGGGCACGTGGATCTACGGTTCGCCGAAACTGGCCCGTTACAACGGCGTGGAAGCGATGGAAATCCTCGGCGCCCCGGCGCCCGGCTACA GTACCGGCGAGGCCATGGCCGAAGTCGAGGCCATTGCCAAGAAACTGCCGGCCGGTGTCGGTATTTCCTGGACCGGGCTGTCGTACGAGGAACGTCTGTC GGGCTCCCAGGCACCTGCGTTGTACGCCTTGTCCCTGCTGATGGTGTTCCTGTGCCTGGCGGCGCTGTATGAAAGCTGGTCGATTCCGATCGCGGTCATG CTGGTGGTGCCATTGGGGATCATCGGTGCGCTGCTGGCCACCAGCCTGCGCGGCTTGTCCAACGACGTGTACTTCCAGGTGGGTCTGCTGGTGACCATCG GTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGAACTGCACGAACAGGGCCGCAGCCTGATCGATGCGGCGATCGAAGCCTGCCGCAT GCGTCTGCGCCCGATCATCATGACCTCCCTGGCCTTCGTGCTCGGTGTGGTGCCCCTGGCGATCTCCACCGGCGCAGGCTCGGGCAGCCAGCATGCGATC GGTACCGGCGTGATTGGCGGTATGCTCACCGCAACCGTTCTGGCGATATTCTGGGTGCCTCTGTTCTTCGTGACCGTGTCCTCGATGGGCCGCCGTAACG TCGACGAACCAGAAACCACTGAAACTCCTAAAGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCGCTACTCTCCCTCGCAATCACCGCCGCCGTGCTGAGTGGTTGCTCGCTGATACCCGATTATCAGCAGCCGCAGACCCCGGTCGCGGCGCAGTA CCCGCAAGGTCCGGCCTATTCGCCGGCCCAGGCGCCGGCCCAGGCCGCCGCCGAGCAGGGCTGGAAGCAGTTCTTCCGCGACCCTGCCCTGCAGCAGCTG ATCCAGGTTTCCCTGGAAAACAACCGCGACCTGCGGGTCGCGGCCCTGAACATCGACGCTTACGCGGCTCAGTACCGCATCCAGCGCGCCGACCTGTTCC CGGCGGTCTCGGCCAATGCCAGCGGCAGCCGCCAGCGTACGCCGGCCCGGATGTCGCAGACCGGCGAGGCCGCCATTGCCAGCCAGTACTCGGCGACCGT CGGCATCAGTGCCTACGAACTCGACCTGTTCGGTCGGGTTCGCAGCCTGAGCGAACAAGCGCTGCAACAATACTTCGCTACCGAAGAAGCGCGTCGCAGC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSEDGSMSKDDLSNYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVRTAVAAQNVQVSSGQIGGLPALPGQQLNATIIGKTRLQTAEQFKAILLKVNADGSQVRLGDVADVALGGENYSVSAQFNGAPASGLAVKLANGANAL DTAKALRKTISDLEPFFPQGMKVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMAEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITVVSAMALSVLVALIFTPALCATMLKAI PHGEHAAPKKGFFGWFNRNFDRSVRSYERGVGNILRHKAPYLLAYVLIVVGMIWLFTRIPSAFLPEEDQGVLFAQVQTPAGSSAERTQVVIDEMRAYLLD KEKDTVASVFTVNGFNFAGRGQSSGMAFIMLKPWGERSAENNVFNLAARAQQHFFSFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQ FLGMAAQSKILSQVRPNGLNDEPQYQLEIDDEKASALGVTISDINNTLSIALGSSYVNDFIDRGRVKKVYIQGQPGARMSPEDLKKWYVRNSAGTMVPFS SFAKGTWIYGSPKLARYNGVEAMEILGAPAPGYSTGEAMAEVEAIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSIPIAVM LVVPLGIIGALLATSLRGLSNDVYFQVGLLVTIGLAAKNAILIVEFAKELHEQGRSLIDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAI GTGVIGGMLTATVLAIFWVPLFFVTVSSMGRRNVDEPETTETPKEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site