Pseudomonas chlororaphis PCL1606, PCL1606_RS23190

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0042908 xenobiotic transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pcz01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcz01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00915 JCVI: efflux RND transporter permease subunit IPR004764 Multidrug resistance protein MdtF-like 1 1041 0.0
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 673 857 7.85E-27
FunFam G3DSA:3.30.2090.10:FF:000002 Efflux pump membrane transporter - - 725 813 1.2E-40
FunFam G3DSA:3.30.70.1430:FF:000002 Efflux pump membrane transporter - - 572 672 4.6E-37
Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain - - 518 1023 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 554 571 7.4E-109
Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 725 813 0.0
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 135 330 6.8E-24
PANTHER PTHR32063 - IPR001036 Acriflavin resistance protein 2 1035 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 623 637 7.4E-109
Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like - - 133 331 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 445 468 7.4E-109
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 567 670 1.73E-29
Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain - - 572 672 0.0
SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 723 809 9.42E-24
SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 182 271 7.46E-21
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 336 359 7.4E-109
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 363 384 7.4E-109
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 470 493 7.4E-109
SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain - - 832 1024 3.01E-46
SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain - - 296 497 3.01E-47
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 36 54 7.4E-109
Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 180 278 0.0
FunFam G3DSA:3.30.70.1430:FF:000001 Efflux pump membrane transporter - - 38 137 2.4E-34
FunFam G3DSA:1.20.1640.10:FF:000001 Efflux pump membrane transporter - - 322 512 5.7E-72
Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain - - 7 517 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 8 32 7.4E-109
FunFam G3DSA:3.30.2090.10:FF:000001 Efflux pump membrane transporter - - 180 278 2.0E-41
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 391 415 7.4E-109
Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain - - 673 871 0.0
Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain - - 38 821 0.0
Pfam PF00873 AcrB/AcrD/AcrF family IPR001036 Acriflavin resistance protein 1 1026 0.0
FunFam G3DSA:1.20.1640.10:FF:000002 Efflux pump membrane transporter - - 859 1023 7.6E-78
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 38 130 2.09E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.