Strain | Pseudomonas chlororaphis strain PCL1606, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GGCGGCCGCTACTCCGACGATTGGCACCGCGCGCACCTGTACAACCCGCGCAACGTGGTGCCCGAATCGAAGATGCCGGCCTACCCGTGGCTGGTCACCC AGCCGGTCGACAGCAGCCACACCGAAACCAAGCTGCGCGCCATGCGCACCCTCGGCGTGCCCTACAACGACGACGATATCGCCGGAGCCGTTGCCTCCCT CAAGGGCAAGACCGAGATGGATGCCCTGGTCGCCTATCTGCAAGTGCTCGGCACTGCCATTAAGAGCAAGAGGTGAACCATGGGTCTTGAACTCGATACC GGCATGATCCGCGGACTCGGCACGCTGGTGGTGATGATCGCCTTCATCGGCCTGTCGATCTGGGTCTTCAACGCCAAGCGCAACCCGGAGTTCGCCCAGG CACGCCTGCTGCCCTTTGCCGACGAACCTGCGCCGGAACTGCCCGGCACTTCATCTGATGACGCTCAATCCGAAGAGCATGCGACAAGGAGCATTCGGCC
|
|
DNA Sequence for Gene |
>PCL1606_RS20075
ATGACCACCTTCTGGAGTACGTACATCTGCGTACTGACCATAGGCAGCCTGATCGGCCTGACCTGGCTGTTGATCGGCACGCGCAAGGGCGAGACCAAGG GCAGCGTCGACCAGACCATGGGCCACAGCTTCGATGGCATCGAGGAGTACGACAACCCGCTGCCGCAGTGGTGGTTCCTGCTGTTCGCCGGCACCCTGGT GTTTTCCGTCGGCTACCTGATCCTCTACCCGGGCCTGGGCAACTGGAAAGGTATCCTGCCCGGCTACAAGGACGGCTGGACCCAGACCAAGGAATGGGAA AAGGAGATGAACAAGGCAGACGCCAAGTTCGGGCCGATCTTCGCCAAATTCGCGGCCATGCCCGTGGAAGAGGTGGCCAAGGACCCGCAAGCCCTGAAGA TGGGCGGACGCCTGTTCGCCTCCAACTGCTCGGTCTGCCACGGCTCGGACGCCAAGGGCGCCTTCGGCTTCCCCAACCTGGCCGACAACAACTGGCGCTG GGGCGGCAGTGCCGACACCATCAAGGCCACCATCATGGGCGGCCGCATGGCCGCCATGCCGGCCTGGGGCGAAGTGCTGGGCGAGGACGGGGTGAAGAAC GTCGCCGCCTATGTACGCCACGACCTGGCCGGCCTGCCGCTGCCGGCCGACAGCGGCGCCGACCTGGCCGCCGGCAAGCAGGCGTTCGCCACCACCTGCG TCGCCTGCCACGGCGCCAATGGCCAGGGCACTGAAATCATGGGCGCGCCGAACCTGACGCAACCGGCCGGCTTCATCTACGGCACCAGCCTGACCCAGCT GCAACAGACCATTCGCCATGGTCGCCAGGGCCACATGCCGGCGCAGAACGAACTGCTCGGCAACGACAAGGTCCAGCTACTCGCGGCCTATGTCTACAGC CTGTCGCACAACGCGGCTGCCCAGCCGCAACCTGAAACCGCAAGCGGGCAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
CCGCTCCTGCACTGCCGCATCGCTCGATGCGGCAGTTCCCCGCCCTTGCGCGACCAAGTGTCGCACCCTCTCTACCTCCTGCCTTTCCACTCTCCGTATT CGGGTCTAAGCTGCTTCGCAGTGGACTGGCAATGGCCGGTCACAGAGCAGAAGTAGCCGTTCCATTCGAAGCCGTAGCTCGAGGACAGGCCGCAAAGGCT GGTATATACCGGCTGTCGCGCCAGTTACCGTCTGTCGCTCGTTCAGGCGCTCGCCACACACCCGGTTACAACTGACCTGTACCCCTCGCCTTTTTCATCC GCTGCGACATTTTGTCCCGGGCCGATTTTGCCCTTACTCCGCGCATGGAAAGGCCGCAGAATCAGCTTTTGAAAGCATTGACCCAGGTCATGGCGCGTTG CAATGACCCCCTGCTTTCTCCATACTTGCGGCCGATTTTTACTCCAATAAAACACCCAAACCGTGGAACCTTAGAATGAGCACAGCAATCAGTCCGACTG
|
|
Amino Acid Sequence |
>cytochrome Cbb3
MTTFWSTYICVLTIGSLIGLTWLLIGTRKGETKGSVDQTMGHSFDGIEEYDNPLPQWWFLLFAGTLVFSVGYLILYPGLGNWKGILPGYKDGWTQTKEWE KEMNKADAKFGPIFAKFAAMPVEEVAKDPQALKMGGRLFASNCSVCHGSDAKGAFGFPNLADNNWRWGGSADTIKATIMGGRMAAMPAWGEVLGEDGVKN VAAYVRHDLAGLPLPADSGADLAAGKQAFATTCVACHGANGQGTEIMGAPNLTQPAGFIYGTSLTQLQQTIRHGRQGHMPAQNELLGNDKVQLLAAYVYS LSHNAAAQPQPETASGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|