Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS10715
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCCCAAGGTCTTTGGCGACGAGCGCGGTTTTTTCTACGAGAGCTTCAATGCCAAGGCGTTCGAAGCCGCGACCGGCGTGCACACCCAGTTCGTCCAGG ACAACCATTCGCGCTCGCAAAAGGGCGTGCTGCGCGGTCTGCACTACCAGATCGAAAACACCCAGGGAAAGCTGGTGCGGGTCGTCGCCGGCGAAGTGCT CGACGTGACGGTGGATATCCGCCGCAGTTCGCCACACTTCGGCAAATGGGTCGGGGTGCGGCTGTCCGCGGATAACCATCGCCAGCTGTGGGTACCGGAA GGCTTCGCCCACGGTTTCGTGGTGCTTAGCGAGTACGCCGAATTCCTCTACAAGACCACCGACTACTACACGCCGGCGTCCGAACGCTGCATTCGCTGGG ACGATCCGACCCTGGCCATCGATTGGCAACTCACGGGCCCGGCGCAGCTCTCGGCCAAGGATCTGGCCGGCAAATTGCTCAGCGAAGCCGAGCTGTTCCC
|
|
| DNA Sequence for Gene |
>PCH03S_RS10715
ATGAGCGGCCGGTTGAAGATCCTGATCAGCGGCCAGCACGGCCAAGTCTCCCAGGCCCTGCAACAGCGCCTGGGCAACCAGCACGAATTGATCGTGCCCG GGCGCGGCCTGCTCGACCTGACAAACCCGGACGCCATTCGCCAACAGGTACGCAGCCTGCGCCCGCAACTGATCATCAACGCGGCCGCCCATACTGCCGT CGATCAGGCCGAGAGCGAGCCGGAGCTGGCCTTTGCGATCAATGCCAGCGCCCCCGGGGTGTTTGCCGAGGAAGCGCGGAAACTGGGGATCCCGCTGATT CACTACTCCACCGATTACGTCTTCGACGGCAGCAAACAGGCCCCCTACACCGAAGACGATGAACCCAACCCACTGAGTGTCTACGGCCAGAGCAAACTGG CCGGCGAACGGGCCATCGACGCAGTCGGTGGCGAACACCTGATCCTGCGCACCAGTTGGGTGTATTCCAGCACCGGCAAGAACTTCCTGCTGACCATGCA ACGCCTGCTGCAGGAAAAACCGCACTTGCGCGTGGTGGCCGACCAGATCGGCGCGCCGACCTGGGCCAGCACCATCGCCGCCAGCACCGCCGCCCTGATC GAACGCTGGCAGGCGGGCCAGCCAGGAGCATGGGGGACCTACCACCTGACCGCTGCTGGCGAGACCTCCTGGTTCGGCTTCGCCCAGGCCATCGGCGAGC ACCTGCTGGCCCAGGGCAAGGCCTGCGCGACCCTGGAGGCGATCCCCTCCAGCGCCTATCCGACACCCGCGCCGCGCCCCCTGAACTCCCGCCTCGACTG CGGCCGCCTGGCGCGCGAGTGGGGCGTGACCCAGCCGGAATGGCGCAGCGCATTGCACGAGTGTCTTGCCGGGCAGGGGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTTCTGTACGGAAAGTCGCCGAGCGGCGATCAGGCAAGGCAAAAACAGGCGAGGAACGGCCGGGGTCGCGCTCGACTGTAGGGGCCTACATGAGCATTCC GAGCCTGTTTTTAACGCGGCATGATCGTCGCGCAGGCAGTTTACGTATAGAACCTAGGCATAATGCGCTTGTACCCACAGGCGCATCGCTCCCATGACTC CACCCCTTCCCCAACGCCCCCGCTGGCGTAGCCTGGCTTTGCTGGCCCTGTGCCTGGCGCCGCTGCTGTGGCCGCTGGAGCATCTGGCCGAGCGTTATTA CCGCAGCGAACTGGCGGGCCAGAACCGCCAGACCCTCGACCTCTACGTCGCCAACCTGCTGGGCACCCTGCACCGCTATGAAGTGCTGCCGCAGATTCTC GGCGAGCTGCCGGCGCTGCGCGCGGTCCTCGGGGCGCCGGACGACGGCGTGACCCAGGGCAACGCCAACCGCCTGCTGAAAAACATCAGCGCCCAGACCG
|
|
| Amino Acid Sequence |
>dTDP-4-dehydrorhamnose reductase
MSGRLKILISGQHGQVSQALQQRLGNQHELIVPGRGLLDLTNPDAIRQQVRSLRPQLIINAAAHTAVDQAESEPELAFAINASAPGVFAEEARKLGIPLI HYSTDYVFDGSKQAPYTEDDEPNPLSVYGQSKLAGERAIDAVGGEHLILRTSWVYSSTGKNFLLTMQRLLQEKPHLRVVADQIGAPTWASTIAASTAALI ERWQAGQPGAWGTYHLTAAGETSWFGFAQAIGEHLLAQGKACATLEAIPSSAYPTPAPRPLNSRLDCGRLAREWGVTQPEWRSALHECLAGQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|