Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS28035

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00032	AraC bacterial regulatory protein HTH signature	IPR020449	Transcription regulator HTH, AraC- type	321	337	1.1E-7
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	291	338	4.26E-12
Pfam	PF12625	Arabinose-binding domain of AraC transcription regulator, N-term	IPR032687	HTH-type transcriptional regulator AraC-type, N-terminal	24	211	5.1E-31
Pfam	PF12833	Helix-turn-helix domain	IPR018060	DNA binding HTH domain, AraC-type	262	338	2.6E-18
PRINTS	PR00032	AraC bacterial regulatory protein HTH signature	IPR020449	Transcription regulator HTH, AraC- type	306	321	1.1E-7
PANTHER	PTHR47894	HTH-TYPE TRANSCRIPTIONAL REGULATOR GADX	-	-	12	341	2.8E-67
SMART	SM00342	aracneu4	IPR018060	DNA binding HTH domain, AraC-type	255	337	1.5E-25
Gene3D	G3DSA:1.10.10.60	-	-	-	238	343	2.6E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.