Pseudomonas aeruginosa LESB58, PALES_49031 (ampD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009253 peptidoglycan catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55846
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55846
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00644 ami_2 IPR002502 N-acetylmuramoyl-L-alanine amidase domain 18 169 5.8E-58
Pfam PF01510 N-acetylmuramoyl-L-alanine amidase IPR002502 N-acetylmuramoyl-L-alanine amidase domain 30 169 4.7E-25
SUPERFAMILY SSF55846 N-acetylmuramoyl-L-alanine amidase-like IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily 7 181 2.22E-63
CDD cd06583 PGRP IPR002502 N-acetylmuramoyl-L-alanine amidase domain 30 171 3.14011E-29
FunFam G3DSA:3.40.80.10:FF:000002 1,6-anhydro-N-acetylmuramyl-L-alanine amidase - - 4 185 6.4E-94
PANTHER PTHR30417 N-ACETYLMURAMOYL-L-ALANINE AMIDASE AMID - - 15 184 1.3E-44
Gene3D G3DSA:3.40.80.10 - IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily 5 187 1.4E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.