Pseudomonas oryzihabitans NBRC 102199, POR01S_RS14690
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans NBRC 102199, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTTTCGATGGCCATCAGTACCGCCGAAGCTCTGGCCCGGCAGCCACGCCCCCTGACGTTCGCCCTGACCGGTACCGACATCAGCAGCGAAGCCCTGC GCCAGGCGCGGCAGGGGACCTACAGCCTGCAGCGGCTGGCTGGGGTGCCGGCCAGCCTGCGCGAGCGCTATTTCCGCACCCATGCGGACGGCAGTTTCGA GATCACCGCGGGCCTGGCGGAGCGACTGTGCTTCGCCCGGCTCAATGTGCTGGAACTGGGGCAGGCCCCCTTGCAGGGGCTCAATGTCATTTTTTGTCAG AACTTGCTGATTTATTTCCGCCGCTGGCTGCGTCGAGACCTGCTCAACCAGCTGGTCCAGCGGCTTGCACCGGGTGGGCTCTTGGTCCTGGGTGTCGGTG AGGTGAGCAATTGGAGCCACCCGCAACTGGTACCCGTCGATCATCCCGAAGTCCTGGCGTTCACCCGCCAGGTAAGCCCCCCGGCATGACAGGAGCCGAG
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| DNA Sequence for Gene |
>POR01S_RS14690
ATGATCGATCGACACGACTACGTAGCCCTCGAGTGGGTCAAGGGAGAGATCGCCGAAACCTTGCAGCAGGCCCGCAAGGCGCTCGAGGCGTTCGTCGACA ACCCGCACGACCGTAGCCGCCTGGGTTTCTGCCGGACCTATGTGCACCAGGTCTACGGCACCCTGCAGATGGTGGAGTTCTATGGCGCCGCGCTGCTCGC CGAAGAGATGGAGCTGCTGCTGCAGGCCCTTCACGAAGAGCGGGTGAACAGCTCGGACGAGGCGCTGGAAGTCCTGATGCAGGCCATCCTGCAGGTGCCG CCCTATCTGGACCGGGTTCTCGAGGCCCGCCGCGATCTGCCACTGGCCATCCTGCCGCTGCTCAACGACCTGCGCTCGGCGCGCGGGGAAAAGCTGCTCT CGGAAACCAGCCTGTTCTCGCCGGATCTGTCCGCCACGCCGCTGTCGCTGAGCGATGCCGAACTGGCAGACCGCGCGGCGCCGGACTGGCTGCCACGCCT GCGCAAGCTGCGCCAGGCGCTGCAGGGCGCCCAGGTCGGACTGTTCCGCGACCGCGACGTCCAGTTGCACCTGGATTATCTGCTGCGGGTCTTCGAGCGG CTGGATCAGCTCTGCGCCGGCTCGCCCTTTGGCGCCCTCTGGCCGGTGGCGGCGGGTCTGACCGAGCTGTTGCAGGCCGGCGAGCTGGACAACAGCAGCT CGATCCGCGGTCTGCTCCGGCAACTGGATCGTGAACTCAAGCGCCTCATCAGCGATGGGGTGACCACCCTCAACCAGCCGGCGCCGGCCGATCTGCTGAA GAATCTGCTGTTCTACCTGGCCAAGGCGCCGGTGCAGAGTCCGCGCATCGCCGCGCTCAAGGCGCACTATCGTCTCGACGAGGCCCTGCCGGATGCCGAG CTGGTGGGCTTCGAGCGTTCGCGCATCGTCGGCCCGGATCGCGAAGCCATGCGCTCGGTGGTGACCGCACTGTGCGAAGAGCTGGTACAGATCAAGGACA GCCTGGACCTGTTCGTACGCAGCGATCGCCAGCAGCCTGCCAGCCTGCGCGGCCTCCTGGCGCCGCTCAAGCAGATCGCCGATACCCTGGCGGTGCTGGG CTTCGGGCAGCCGCGCAAGGTGGTGCTGGAGCAGCACGAAGCCGTGGCCGAACTGGCCGAGGGCGTGCACGAGGCCAGCGACGCCGCCCTGATGGATATC GCCGGGGCACTGCTCTATGTCGAAGCCACCCTGGCCGGCATGGTCAGTGGCAACGAGGTCAGCGATGCCGAGGAGAGCCGGCTGCCCACCACCGACATCG ATCAGCTGCATCGGGTGGTGGTGCGCGAGGCGCGCAACGGTCTGGAGCAATCCAAGGACGCAATCATCGAGTTCATCGCCTCCCAGTGGAATCATGTCCA CCTGGAGTCGGTGCCCCTGCTGCTGACCCAGGTCCGTGGCGGCCTGGCGATGATTCCCCTGGAACGGGCCGCGGCCCAGGTCCAGGCGGCCAACGACTAC ATCTGCCAGCAGCTGTTGGGCAAGCAGGCCGTGCCCGACTGGCAGAGTCTGGACACCCTGGCCGACGCCATCACCAGCGTCGAGTACTACCTGGAGCGCC TGGCGGAAGACCCGTCCACGCCCCACGACATGATTCTCGACATCGCCGACGAAAGCCTCATCGCTCTCGGCTATCCGCCCAGGGCGGCCGGCGAAGGCGA GGCGGCGGCCGCGCCCCTGGCCTCCGGCGAGGTCGAGCCGCCGGCTCAGGAGCTGCCCGAAGAATTGCCATCGCCGGCGGAGCCGGTGGCCGAAGAGGCG CTGGAACCTACCGCCCTGCCGGTCGAGGAGCCTGCGGACGCCGACGAAGAATTCCTGATCGAATTCGAGCCTGCCGCAGCGCAGGAGCCTCCAACCTCCG CGACCCAGGCCGACGAGCAGGACGCGGCCGCGGTGAGCGATGAAGCGCCGCAGGCCGAGGCCGAGCCGGAGGGTGCAGAGCCCGAGGAGTTGCTGGCCGG CATCGAGCTGGACAGCCTGCCGCCGCCGACCCCCGATGCCGAGGCGATCGCCGAGGTGCTGGCGACGCCGGTCAACCCCATCAATCCTCCGGCGGCGCAG GTGCCGCAGGCGCTGCTGCCGCCCGCGGCCGATGCCGAGCCGGTCGAGGAGGAGCTGCGCGAGGTCTTTATCGAAGAGGCCGGCGAGGTCCAGGCCGAAC TGGAGCGCTGGCTGCCGACCTGGCAGGCCGAGCCCGAGCAGCGCACCGCGCTGAGTGAATTGCGGCGCAACTTCCACACCCTCAAGGGCAGTGGCCGCAT GGTCCAGGCGCTGGTCATCGGCGAACTGGCCTGGGCGCTGGAGAATCTGTTCAATCGCCGGCTGGATCACAGCGTCGCGCACAGCGCTGCCGTGCAGACG GTGGTCGAGCAGACCTGCGCGCTGCTGCCGGAGCTGGTCGCGGAATACGCCGAGGATCGTCAACGGCAACGTGACGACGTCGACTGGCTGGCCCACGCGG CCCACGCGCTGGCCCGCAACGAAGCCCTGCCCGAGCGAGCGCCGGCCGGTAGCGCGGCCCCGTCCGCGGCAGCTGCGTTGCCCGTGGCAGAACTCGTCGA ATCCGCGATTCCTGCACCTGCCGCCGCCGAGGCCGATACCCAGCTGCTGGATATCTTCCGCACCGAAGCCCAGGCGCACTTGGAAACCGTGCGCCGTTTC CTCGAGTCGGCCGACGCCGGCAGTGCCCAGCCGGTCTCCGACAATCTCCTGCGCGCCCTGCACACCCTCAAGGGCAGTGCCCATATGGCGGGCAGTTCGC CGATGGCCGAACTGGCGTCGGCGCTGGAGCGGCTGGCCAAGGAATACAAGCTCGCCCATGTCGCCTTCGCCGAACCCGAGTGCGGCTTGCTCGCCCAGGG CGCCGAGTTGCTGGAGCAGCGACTGGCCGAACTCGACGAAGGGTCGCTGGCGACCCCGCTGGCGGGTGCGGCGGAAGTTATCGCGCGCTGCGAAGGGCTG CTGGAGGAGCTGAATCCCCAGCTGCCGATCCCCGCGGCGCCGCTGCCAGAGCAGCGTGACGTCCTGCGCCTGACCGATTTCCTGATGCCGGCCATGGATC TGCTGCTGGAAGCCGACGAGCGCCTGCATGCCTGGCGCACCGACGGTGATCTGGCTGCCTGCCCGGATCTGCTGGCCGAACGCCTGAACACCTTTGCCGA CGGGGCCGCCCGGGTCGGGTTGGCCGATGTCGAGCAACTGGCCGAAGCCCTGCAGGTGGTCTATGCCGCCGCGGCGAGCGGTTCGCTGCCCGCCGATGCG GCCTTCTTCCGCGAGGCGGAAGAGGCCCAGGAAGCCCTAATCAGCATGCTCAATCAGCTGGCCGGTGGCATGCGGGCGACGCCCAGCGAGGAACGCATCC AGGGCCTGCGCGGCCTGCTGGCCGGCATTCTCGCCGGGTTGCCCATGGCGGACACCAGCCTGCTGGCCGAGCCCGAACCCGAAGAGCTCTTCGATCCGGC AACGGCCACGCCGGTGGCACCTGAGCTGGCGCTGGACGTCGAACTGCCAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCC GAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAGCCTGACCTCGAGCTGCCGGAAGAGCCGCAAGAGCCGCAGCCGCTGGTAGCGGACAGCGAGC CGGTGGCGGTCGAGCCCGAGGCTGCCGAGCCCGTCGATCCGGAAATGCAGCTGATCTTCCTTGAAGAGGCCCAGGATCTGCTGGACAGCGCCGACCGGGC GCTGAAACGCTGGCTGGTGGAGCCGCAGCAGCGCTTCCACCTCGGCACCCTGCAGCGCGATCTGCATACCCTCAAGGGCGGCGCCCACCTCGCCGGGGTG GCGCCGGTCGCGCACCTGGCCACGGAGCTGGACGCCATCTACGAAGGCCTGCTCGACGGCCGTCTCGCCGGCGGTGCCGAACTGGCCCAGCCCCTGCGCG ATGCCCATGGCTGCCTGGCGGCGCAACTCGAAGAGCTGGCGGCGGGGGAGCCGGTCAGCGAGCATGCCGACCAGGTCGAGCGCCTGCAGCGGATTCGTAG CGGTCATCTCGATGACCTGCCGGCGCTGGACGACAGCGGATCGGCCCCGGGCGAGCCCGCGCTCGGCGAATCGCTCGCGGACCACCCGGCGGACGCCGAG TCCGCGCTCCTGGAGCCGGTGCCCATGGCGGCCGCGCCGGCGGCGGCGGAAGGTCCCGACGCCGAGTTGCTGGCCATCTACATCGAAGAGAGTCGCGACC TGCTCGACAGCATGGCGACCTCGCTGCGCGCCTGGGAAGCCGAGCCGCACAACAGTCTCGAACTGGAATCCCTGCTGCGCGACCTGCACACCCTCAAGGG CGGTGCGCGGCTGGCCGAGGTGGATGCCATCGGCGATCTCGCCCATGCCCTGGAGGCCTTCTACGAAGGACTGGCGCGCGGACGGATCAAGCCCGGCGCG GACCTGGGCGACCTGCTGCAGCGCTGCCATGACCGCCTGCACGAGCAACTCGAAGCCCTGGCCCGGGGCGAGACCCCGGTCCCGGCCGCCGATCTCATCG CGGCCTTGCGCGACTACCGCGGCGAGCCACTGGCGACCGGCGTGACCGCCGCGGCCGTGGTGGCGGCACCGGTCTTCGATGCCGACACCGATGCGGAAAT CCTCGAGATCTTCATCGAGGAAGCCCAGGACCTGCTGGTCAGCATGGACGAGGCCCTGGCGGACTGGTCGGCCGCGCCAGATGTGGCGGTGGACGAATTG CTGCGCTGCCTGCATACCCTCAAGGGTGGCGCGCGCCTGGCCGGTCTGCACGGCCTGGGCGAGCAGGCCCATGAACTGGAACAGCAACTGGCGGAATTGC GCTCGCTCGCCGTGGGGCTGAGCGAGGGCGACCGTGAACGGGTACGCGCCCTGGCGACCCAGGGCGTCGACGGGCTGCAACTGGCGGTCGCCCAGCTGTC GCTGCCGGCCGCCGCCCAGGCGAATGCGGCGGCCGAGCCGGTCGAGACGGCCGAGGCCGAACCGGACGTCGTGCGCGAGGCTGAGCAGCCACCGGTCGCG GACGTCGCCGAGGAGGAAGCGCCTGCCGACCCTGACGTCGAGCCCGCCGTCGAGGGCCTGCCTGTTGCCCTGCCTGAGCAAGACAGCGCGGCGGCCCCCG TCATGGTCGCGGCCGAGACACCCGCGGCCCCAGTGGCGCCACTGCCCTTCGTGCAACGCCTGCAGCAGGTCCGCCAGCAGGCGGCGCAGCGGCGTTCGTC CCAGGAGCTGGTGCGGGTACCGGCCGCGCTGCTGGAGCAGCTGGTCAACTTGGCCGGCGAGACCTCGATCTTCCGCGGTCGCGTCGAACAGCAGGTCAGC GACATCGGCACCACCCTAGGCGAGATGGAAGCCACCATCGAGCGGGTGCGCGATCAGCTGCGCCGGCTGGATACCGAGACCCAGGCGCAGATCATCAGTC GTCACCACGAAGACGTGGATCGCGCCGGCTACGAGGATTTCGACCCCCTGGAGCTGGATCGCTATTCCCAGCTGCAGCAGCTGTCCCGCGCCCTGTTCGA ATCGGCGTCCGACCTCCTGGATCTGAAGAACACCCTGGGCCAGCGCAATCGCGATGCCGAGACCCTGCTGCTGCAACAGGCGCGGGTCAACACCGAGCTG CAGGAAAGCCTCATGCAGACGCGCATGGTGCCTTTCGAGCGCATGGTGCCGCGCCTGCACCGGGTGGTACGCCAGGTCAGCGCCGAACTGGACAAGCCGA TCGAGCTCAGGGTCGGCAACGCCGAAGGCGAGCTGGACCGCACGGTGCTCGAGCGGATCATTCCGCCGCTGGAGCACATGCTGCGCAACGCCATCGACCA TGGCGTCGAGGACGCCGCCGGACGCCAGCGCGCCGGCAAGCCGGCCGAAGGCGTGATCAGCCTGGATCTGCGCCGCGAAGGTGGCGACATCATCCTGACC CTGGCCGACGACGGCCGTGGCATCGACCTGGCCGCGGTGCGCCGCAAGGCCATCGAGCGCGGCCTGATGGCGGAAGACGCGCAGCTCGCCGATGAGGAGC TGCTGCAATTCATCCTCGAATCGGGCTTCTCCACCGCGCCGACCGTCACCCAGATCTCCGGGCGGGGGGTGGGCATGGACGTGGTGCATCAGGAGGTGAA GCAGCTCGGCGGCAACATGGACATCCACAGCGTGGCGGGCGAGGGGACGCGCTTCACCATCCGCCTGCCGTTCACCGTGTCGGTGAACCGCGCGCTCATG GTGCATGCCGGCGACGACCTCTATGCCGTGCCGCTCAACACCATCGAAGGCATCGTGCGGGTGACCGCGGCCGATCTCGAACGCTATTACCGTCCGGGAG CGGGCACCTTCGAATACGGCGGCCAGCACTATGACCTGCGCTATTTGGGGCACCTGCTTGGCAACGGCCAGCAGCCCAAGCTGAGCGGCCAGAGTCTGCC GCTGCCGGTGGTGCTGGTGCGCGCCGCCGAATACGCGGTGGCGGTACAGGTGGATGCGGTGGCCGGTTCGCGGGAGATCGTGGTGAAGAGCCTGGGTCCG CAATTCGCCGGGGTGCCGGGTCTGTCTGGTGCCACCCTGCTGGGGGACGGGCGCGTGGTGGTGATTCTCGACCTGCTGGCGATGATCCGCAGTCAGCGCG CCAGTGGCGAAGAGCTGGCGCGGCTGGCGCAGGGTCCGGCCACCGTGGCCGAGGTCACCCGACCGGCGCTGGTCATGGTGGTCGACGATTCGGTCACCGT GCGCAAGGTCACCAGCCGCCTGCTGGAACGCCACGGCATGGAGGTCTTCACCGCCAAGGACGGGGTGGACGCCATCGCCCAGTTGCAGGAGCGGCAGCCG GACATCCTGCTGCTGGACATCGAGATGCCGCGCATGGACGGCTTCGAGGTGGCGACCCTGGTCCGCCACGATGCGCGCCTCAAGGACCTGCCGATCGTGA TGATCACCTCCCGTACCGGGGAAAAACACCGCGAGCGGGCGCTGAGCCTGGGCGTGAACGAATACCTGGGCAAGCCCTACCAGGAGAGCGAACTCCTGGC CCACATCCATCGGTTGGTCAGGGAACATGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATGCACACCGCCCGCGTCGCCATCCTGGCCGACAGTCCGCTGCAGCGTCACGTACTGCAGCAGGTGCTGGCCGACAATGGCTATCACGTCGTCCTCAAC AGTGATCCGGAGCGCTTCGACGAAGCGGCCTGGCCCTCGGTCGCGACCGACCTGTGGCTGATCGACCTGAGCCAGACCGAGGAATCACCGCTGGTGGACG CGCTGCTGGAGGGGGCCGAGGTGCCCATCCTGTTCGGCGAAGGCCAGGCGCCGGAGCGCTTCACCGACCCCTTCACCCAGTGGGAGAAGCGCCTGATCGG CAAGCTCAAGCGGCTGATCGGCGATCCGGTGGCGGCGGTCGGTCCGGCCCTGGAGACCTTGCTGCAAGACCAGCCGCGACCGCCGCGCCTGACCCTGCCG GAACCCCTGGCCAACCTGCCGCTGCCCGCCGGCGATCCGGCTCCCGAGGTCTGGTTGCTGGCGGCCTCCCTGGGCGGTCCGGCGGCGGTGAAGGCCTTTC
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| Amino Acid Sequence |
>chemotaxis protein
MIDRHDYVALEWVKGEIAETLQQARKALEAFVDNPHDRSRLGFCRTYVHQVYGTLQMVEFYGAALLAEEMELLLQALHEERVNSSDEALEVLMQAILQVP PYLDRVLEARRDLPLAILPLLNDLRSARGEKLLSETSLFSPDLSATPLSLSDAELADRAAPDWLPRLRKLRQALQGAQVGLFRDRDVQLHLDYLLRVFER LDQLCAGSPFGALWPVAAGLTELLQAGELDNSSSIRGLLRQLDRELKRLISDGVTTLNQPAPADLLKNLLFYLAKAPVQSPRIAALKAHYRLDEALPDAE LVGFERSRIVGPDREAMRSVVTALCEELVQIKDSLDLFVRSDRQQPASLRGLLAPLKQIADTLAVLGFGQPRKVVLEQHEAVAELAEGVHEASDAALMDI AGALLYVEATLAGMVSGNEVSDAEESRLPTTDIDQLHRVVVREARNGLEQSKDAIIEFIASQWNHVHLESVPLLLTQVRGGLAMIPLERAAAQVQAANDY ICQQLLGKQAVPDWQSLDTLADAITSVEYYLERLAEDPSTPHDMILDIADESLIALGYPPRAAGEGEAAAAPLASGEVEPPAQELPEELPSPAEPVAEEA LEPTALPVEEPADADEEFLIEFEPAAAQEPPTSATQADEQDAAAVSDEAPQAEAEPEGAEPEELLAGIELDSLPPPTPDAEAIAEVLATPVNPINPPAAQ VPQALLPPAADAEPVEEELREVFIEEAGEVQAELERWLPTWQAEPEQRTALSELRRNFHTLKGSGRMVQALVIGELAWALENLFNRRLDHSVAHSAAVQT VVEQTCALLPELVAEYAEDRQRQRDDVDWLAHAAHALARNEALPERAPAGSAAPSAAAALPVAELVESAIPAPAAAEADTQLLDIFRTEAQAHLETVRRF LESADAGSAQPVSDNLLRALHTLKGSAHMAGSSPMAELASALERLAKEYKLAHVAFAEPECGLLAQGAELLEQRLAELDEGSLATPLAGAAEVIARCEGL LEELNPQLPIPAAPLPEQRDVLRLTDFLMPAMDLLLEADERLHAWRTDGDLAACPDLLAERLNTFADGAARVGLADVEQLAEALQVVYAAAASGSLPADA AFFREAEEAQEALISMLNQLAGGMRATPSEERIQGLRGLLAGILAGLPMADTSLLAEPEPEELFDPATATPVAPELALDVELPAEAEAEAEAEAEAEAEA EAEAEAEAEAEAEPDLELPEEPQEPQPLVADSEPVAVEPEAAEPVDPEMQLIFLEEAQDLLDSADRALKRWLVEPQQRFHLGTLQRDLHTLKGGAHLAGV APVAHLATELDAIYEGLLDGRLAGGAELAQPLRDAHGCLAAQLEELAAGEPVSEHADQVERLQRIRSGHLDDLPALDDSGSAPGEPALGESLADHPADAE SALLEPVPMAAAPAAAEGPDAELLAIYIEESRDLLDSMATSLRAWEAEPHNSLELESLLRDLHTLKGGARLAEVDAIGDLAHALEAFYEGLARGRIKPGA DLGDLLQRCHDRLHEQLEALARGETPVPAADLIAALRDYRGEPLATGVTAAAVVAAPVFDADTDAEILEIFIEEAQDLLVSMDEALADWSAAPDVAVDEL LRCLHTLKGGARLAGLHGLGEQAHELEQQLAELRSLAVGLSEGDRERVRALATQGVDGLQLAVAQLSLPAAAQANAAAEPVETAEAEPDVVREAEQPPVA DVAEEEAPADPDVEPAVEGLPVALPEQDSAAAPVMVAAETPAAPVAPLPFVQRLQQVRQQAAQRRSSQELVRVPAALLEQLVNLAGETSIFRGRVEQQVS DIGTTLGEMEATIERVRDQLRRLDTETQAQIISRHHEDVDRAGYEDFDPLELDRYSQLQQLSRALFESASDLLDLKNTLGQRNRDAETLLLQQARVNTEL QESLMQTRMVPFERMVPRLHRVVRQVSAELDKPIELRVGNAEGELDRTVLERIIPPLEHMLRNAIDHGVEDAAGRQRAGKPAEGVISLDLRREGGDIILT LADDGRGIDLAAVRRKAIERGLMAEDAQLADEELLQFILESGFSTAPTVTQISGRGVGMDVVHQEVKQLGGNMDIHSVAGEGTRFTIRLPFTVSVNRALM VHAGDDLYAVPLNTIEGIVRVTAADLERYYRPGAGTFEYGGQHYDLRYLGHLLGNGQQPKLSGQSLPLPVVLVRAAEYAVAVQVDAVAGSREIVVKSLGP QFAGVPGLSGATLLGDGRVVVILDLLAMIRSQRASGEELARLAQGPATVAEVTRPALVMVVDDSVTVRKVTSRLLERHGMEVFTAKDGVDAIAQLQERQP DILLLDIEMPRMDGFEVATLVRHDARLKDLPIVMITSRTGEKHRERALSLGVNEYLGKPYQESELLAHIHRLVREHD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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