Pseudomonas sp. M1, PM1_RS00115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M1 PM1contig_001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGTTAATATCCGCAACCCTTGAAAACCGCCGTCTCCAGTGCCTACTGCCAGGAGCGCGATAAATCCCCGGTAATCATTGAAGGTACGACCTGGATGCC CGCCGTCAAAGTTAAAGAGAACGAACCCTTCGACGTAGCCCTGCGTCGTTTCAAGCGCTCCTGCGAAAAAGCCGGTGTACTGGCTGAAGTCCGTAGCCGC GAGTTCTACGAGAAGCCCACCGCCGAGCGCAAGCGCAAGGCCGCTGCTGCCGTCAAGCGTCACGCCAAGAAAGTGCAGCGCGAACAGCGCCGCCGCGAGC GTCTGTACTGAGTTCGACTCAGCCGCACGCTCTGCACATCGCCCGGCCCACTCGCCGGGCGAGTGCCTGAAAAGCTACACCGCACTCCGATTCGCACCTG GCGAAGCTCGGAGTTTTTTGCTTTTCACGCCCCATGAAATGCCATACTCCAAGCCAGCCTTGGGTGTATGCCTGGGTCCATCCTGCGTCCCGACGAGTCT
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| DNA Sequence for Gene |
>PM1_RS00115
ATGGCCGGCCTGATTCCGCAATCCTTCATCGATGACCTGCTCAACCGCACCGACATCCTCGATGTGGTGAGTTCGCGCATCCAGCTGAAGAAGACCGGCA AGAACTACAGCGCCTGCTGCCCGTTCCACAAGGAGAAGACGCCCTCCTTCACCGTCAGCCCCGACAAGCAGTTCTACTACTGCTTCGGCTGCGGCGCCGG CGGCAACGCGCTGGGCTTCATCATGGACCACGACAACCTGGACTTCGTCCAGGCCGTGGAGGACCTGGCCAAGCGCGCCGGCATGGACATCCCCCGCGAG GAAGGCCGGCGCGGCAAGCCGCGGCAGCCGACCGACTCGCCGCTGTACCCGCTGCTGAACGCCGCCGCCGACTACTACCGCCAGGCACTGAAAAGCCACC CGGCGCGCAAGGCCGCGGTGGAGTACCTCAAGGGCCGCGGCCTGACCGGCGAGATCGCCCGCGACTTCGGCCTGGGCTTCGCCCCGCCGGGCTGGGACAA CCTGCTCAAGCACCTGGGCGGTGACAACCTGCAGCTCAAGGCCATGCTCGACGCCGGCCTGCTGGTGGAGAACCCCGACAGCGGCAAGCGCTACGACCGC TTCCGCGACCGGGTGATCTTCCCCATCCGCGACAGCCGCGGGCGGGTGATCGCCTTCGGCGGCCGGGTGCTGGGCGACGACAAGCCCAAGTACCTGAACT CCCCGGAAACCCCGGTATTCCACAAGGGCCAGGAACTCTACGGGCTGTTCGAGGCGCGCAAGAACAACCGCGACCTCGACGAAATCATGGTGGTGGAAGG CTACATGGACGTGATCGCCCTGGCGCAACAGGGCATCCGCAACGCCGTGGCCACCCTCGGCACCGCCACCAGCGAGGAACACATCAAGCGCCTGTTCCGC CTGGTGCCGAACATCCTGTTCTGCTTCGACGGCGACCAGGCCGGGCGCAAGGCCGCCTGGCGCGCCCTGGAATCGGCCCTGCCGAACCTGCAGGACGGCC GCAAGATCCGCTTCCTGTTCCTCCCCGAGGGCGAGGACCCGGACAGCCTGGTCCGCGCCGAAGGCCCCGACGCCTTCCGTGCGCGCCTGGTGCAGCAGGC CCAGCCGCTGGCCGACTACTTCTTCCAGCAACTGATGCAGGAAGCCGACCCCAGCACCCTGGAAGGCAAGGCGCACCTGGCGACCCTGGCCGGCCCGCTG CTGGAGAAGATCCCCGGCAACACCCTGCGCCTGCTGATGCGCCAGCGCCTGGGCCAGCTCACCGGACTGAGCGGCGAGGCGCTCAACCACCTGAACGCGC CACGCTCAAGCAGTAGTGGCCAAGGGCACGGCCAAGCCACGCCAAGCGTCGCCCCGGACAGCCACGCGCATGAATACAGCGACTACGATGTAGGCCACTT CGCCGATCACGGCGAGCCCAGCTACCAGGACAGCGCCAGCTATTTCGAGGCGCCGTCGGATTTCGCTGGCGGCAAAGCGGGCAAGAAGCCCTGGAAGGGC GAGCGCAAATGGGACGGCAAAGGTGGCAAGGGCGGCAAGCGCGGCGACTTCGCCCCGCGCCAGCCGCGCACCGAGATCAGCGTCGAATCGCCCACCCTGA CTGCGCTGCGCACCCTGCTGCACCACCCGCAGCTGGCGCAGAAGGTCGAGGACGCCAGCCATTTCGCCAACGAAGGGCAGACCTACTCGCAGCTGCTGGC AGCGCTCGTCGAAGCGCTGCAGAAGAACCCGAAGCAGCGCTCGATGCAACTGATCGCGCGCTGGCACGGCACCCCACAAGGACGCCTGCTGCAGGCCCTG GCGGAAAAGGAATGGCTGATCGACCAGGGCAATCTTGAAAAGCAGTTCTGCGACACCATTACTACACTTGCACACAGTCAACTGCACAACAGCCGCGAGG CGCGGCTGCGCAGCGTGATGCAGAAGAGCCCCAGTGAACTGACTGACGAAGAGAAAGCTCTATTGAGGGAACACTTCAGCAATGCCTCTTCACCAGGCCC CCAGAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTGGCGCCTGAAGCCTCGAAGCTGGTATAATCCTCGGCTTATTTCAGCCCGCCAAGACCTTCAGTGGATAGGGTGTTATGTCCGGAAAAGCGCAACAGC AATCTCGTCTCAAAGAGTTGATCAGCCGTGGTCGTGAGCAGGGCTACCTGACTTACGCGGAGGTCAACGACCACCTGCCGGAGGATATTTCCGATCCGGA ACAGGTGGAAGACATCATCCGCATGATCAACGACATGGGGATCAACGTATTCGAGACAGCCCCGGATGCGGATGCCCTGTTGCTGGCCGAAACCGATACT GACGAAGCCGCAGCCGAAGAGGCCGCCGCTGCCCTGGCCGCGGTGGAGAGCGACGTCGGCCGCACCACTGACCCGGTGCGCATGTACATGCGCGAAATGG GCACCGTGGAACTGCTGACCCGCGAAGGCGAGATCGAAATCGCCAAACGCATCGAGGAAGGCATCCGCGAAGTCATGAGCGCCATCGCCCAGTTCCCTGG
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| Amino Acid Sequence |
>DNA primase
MAGLIPQSFIDDLLNRTDILDVVSSRIQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGCGAGGNALGFIMDHDNLDFVQAVEDLAKRAGMDIPRE EGRRGKPRQPTDSPLYPLLNAAADYYRQALKSHPARKAAVEYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQLKAMLDAGLLVENPDSGKRYDR FRDRVIFPIRDSRGRVIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLFEARKNNRDLDEIMVVEGYMDVIALAQQGIRNAVATLGTATSEEHIKRLFR LVPNILFCFDGDQAGRKAAWRALESALPNLQDGRKIRFLFLPEGEDPDSLVRAEGPDAFRARLVQQAQPLADYFFQQLMQEADPSTLEGKAHLATLAGPL LEKIPGNTLRLLMRQRLGQLTGLSGEALNHLNAPRSSSSGQGHGQATPSVAPDSHAHEYSDYDVGHFADHGEPSYQDSASYFEAPSDFAGGKAGKKPWKG ERKWDGKGGKGGKRGDFAPRQPRTEISVESPTLTALRTLLHHPQLAQKVEDASHFANEGQTYSQLLAALVEALQKNPKQRSMQLIARWHGTPQGRLLQAL AEKEWLIDQGNLEKQFCDTITTLAHSQLHNSREARLRSVMQKSPSELTDEEKALLREHFSNASSPGPQS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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