Pseudomonas sp. M1, PM1_RS00115

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00974
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016779 nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10410
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006269 DNA replication, synthesis of RNA primer
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00974
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003896 DNA primase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00974
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01807 CHC2 zinc finger IPR002694 Zinc finger, CHC2-type 6 100 1.4E-41
SUPERFAMILY SSF56731 DNA primase core - - 115 425 1.31E-110
PANTHER PTHR30313 DNA PRIMASE - - 1 660 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 636 669 -
SUPERFAMILY SSF117023 DNA primase DnaG, C-terminal domain - - 530 659 6.41E-27
FunFam G3DSA:3.90.980.10:FF:000001 DNA primase - - 109 241 8.0E-49
MobiDBLite mobidb-lite consensus disorder prediction - - 475 520 -
PIRSF PIRSF002811 DnaG IPR030846 DNA primase DnaG, bacteria 2 664 0.0
Gene3D G3DSA:1.20.50.20 DnaG, RNA polymerase domain, helical bundle - - 370 426 1.9E-21
NCBIfam TIGR01391 JCVI: DNA primase IPR006295 DNA primase, DnaG 5 419 0.0
SMART SM00493 toprim5 IPR006171 TOPRIM domain 260 331 8.8E-22
SMART SM00766 dnag_dnab_bind_seq8d IPR013173 DNA primase DnaG, DnaB-binding domain 531 659 6.0E-31
SMART SM00400 primzinc3 IPR002694 Zinc finger, CHC2-type 36 90 4.0E-36
Pfam PF08278 DNA primase DnaG DnaB-binding IPR013173 DNA primase DnaG, DnaB-binding domain 535 657 1.6E-21
Gene3D G3DSA:3.90.580.10 - IPR036977 DNA Primase, CHC2-type zinc finger 2 101 2.8E-36
Pfam PF08275 DNA primase catalytic core, N-terminal domain IPR013264 DNA primase, catalytic core, N-terminal 125 252 8.5E-42
CDD cd03364 TOPRIM_DnaG_primases IPR034151 Bacterial DnaG primase, TOPRIM domain 260 341 3.34816E-37
FunFam G3DSA:3.40.1360.10:FF:000002 DNA primase - - 242 369 9.1E-55
Hamap MF_00974 DNA primase [dnaG]. IPR030846 DNA primase DnaG, bacteria 4 660 29.853678
Gene3D G3DSA:3.40.1360.10 - - - 242 369 6.1E-43
SUPERFAMILY SSF57783 Zinc beta-ribbon - - 4 101 1.7E-37
Pfam PF13662 Toprim domain IPR006171 TOPRIM domain 260 328 6.2E-18
MobiDBLite mobidb-lite consensus disorder prediction - - 429 457 -
MobiDBLite mobidb-lite consensus disorder prediction - - 430 448 -
MobiDBLite mobidb-lite consensus disorder prediction - - 494 520 -
Pfam PF10410 DnaB-helicase binding domain of primase IPR019475 DNA primase, DnaB-helicase binding domain 372 424 7.3E-10
FunFam G3DSA:3.90.580.10:FF:000001 DNA primase - - 1 101 1.8E-42
Gene3D G3DSA:1.10.860.10 DNAb Helicase; Chain A IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal 518 665 2.4E-31
Gene3D G3DSA:3.90.980.10 - IPR037068 DNA primase, catalytic core, N-terminal domain superfamily 112 241 5.7E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.