Pseudomonas sp. M1, PM1_RS17675

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01113
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003684 damaged DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF11799
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF11799
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_01113 DNA polymerase IV [dinB]. IPR022880 DNA polymerase IV 5 352 37.809467
Gene3D G3DSA:1.10.150.20 - - - 185 233 1.7E-19
Gene3D G3DSA:3.30.1490.100 - IPR036775 DNA polymerase, Y-family, little finger domain superfamily 245 352 1.5E-24
FunFam G3DSA:3.30.70.270:FF:000002 DNA polymerase IV - - 71 169 4.8E-39
CDD cd03586 PolY_Pol_IV_kappa IPR022880 DNA polymerase IV 9 338 0.0
Pfam PF11798 IMS family HHH motif IPR024728 DNA polymerase type-Y, HhH motif 171 201 5.5E-8
FunFam G3DSA:1.10.150.20:FF:000019 DNA polymerase IV - - 171 232 7.7E-24
Pfam PF00817 impB/mucB/samB family IPR001126 UmuC domain 11 158 2.8E-49
Pfam PF11799 impB/mucB/samB family C-terminal domain IPR017961 DNA polymerase, Y-family, little finger domain 244 338 6.0E-8
SUPERFAMILY SSF56672 DNA/RNA polymerases IPR043502 DNA/RNA polymerase superfamily 3 238 4.0E-94
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 1 184 7.1E-44
FunFam G3DSA:3.40.1170.60:FF:000001 DNA polymerase IV - - 25 77 2.6E-25
SUPERFAMILY SSF100879 Lesion bypass DNA polymerase (Y-family), little finger domain IPR036775 DNA polymerase, Y-family, little finger domain superfamily 246 352 7.26E-23
Gene3D G3DSA:3.40.1170.60 - - - 19 78 1.7E-24
PANTHER PTHR11076 DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER - - 4 345 2.5E-98

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.