Pseudomonas chlororaphis PA23, EY04_RS09100

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.760.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00605
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.760.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pch01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pch00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pch02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00605 Class IC cytochrome C signature IPR008168 Cytochrome c, class IC 155 166 1.6E-5
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 55 222 4.14E-32
FunFam G3DSA:1.10.760.10:FF:000013 Cbb3-type cytochrome c oxidase subunit - - 109 225 1.7E-54
NCBIfam TIGR00782 JCVI: cytochrome-c oxidase, cbb3-type subunit III IPR004678 Cytochrome c oxidase cbb3-type, subunit III 34 318 1.4E-76
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 234 312 4.6E-11
Gene3D G3DSA:6.10.280.130 - IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily 1 92 1.8E-37
FunFam G3DSA:1.10.760.10:FF:000015 Cbb3-type cytochrome c oxidase subunit - - 226 323 5.1E-48
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 145 219 1.1E-12
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 110 224 1.8E-32
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 229 318 2.33E-20
PRINTS PR00605 Class IC cytochrome C signature IPR008168 Cytochrome c, class IC 197 219 1.6E-5
PANTHER PTHR33751 CBB3-TYPE CYTOCHROME C OXIDASE SUBUNIT FIXP - - 39 316 5.8E-61
Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal 37 83 1.2E-23
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 225 325 1.4E-25
PIRSF PIRSF000006 Cbb3-Cox_fixP IPR004678 Cytochrome c oxidase cbb3-type, subunit III 1 319 2.9E-104

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.