Pseudomonas mandelii JR-1, OU5_RS00385
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii JR-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CATTCGCGTCATCAACGCCGCCTGGCTGCCTTGGGCGTCAAGTACCGAATAGAAGCCTTTCTGCTGCCAGGCACGCTTGCCGAAAGCGTCATAAAACAAC CGGGTCGGCGCCGCGGCCTGACTGCGTTCGCCGTCGTAAACCGGGGATTTGGTCCCGCCACGCGCCGCCCCTTCGCCGCTGCCCAGATTGAGCTGACAGG CGGAGTCGTAGCAGGCATGGCAGGCCACGCACTTTTCGGTGAAGATCGGTTGAATGTCACGTGTGTAGGAAATCGCCGGACCCTGCGCAGCGGCATCCCA GCTTATAAGCAGCATAAAGATGCTGGTGATGACGCGATACGACATGTCCCTGGTCCTGATCCTGAAAAAACGCCGCGATTCTACCGGTCTCGCCCCCTCA CCAACATGAGCGATATTCATGCAAAACCGGAGCATGCTCTAAAAGCGCACAGGTTTGCTATTATCCCGGCCCTTCGTCATGGTCTTTTCGAGTAGTCCCA
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| DNA Sequence for Gene |
>OU5_RS00385
ATGTCCGATCGCAGCGTTCGCCTTCAAGCTCTCAAGCACGCCCTCAAAGAGCGCATCCTGATTCTCGATGGCGGCATGGGCACGATGATCCAGAGCTACA AGCTCGAAGAGCAGGATTACCGGGGCAAACGCTTTGCTGACTGGCCAAGCGACGTCAAAGGTAACAACGACCTCTTGGTGTTGACGCGCCCGGACGTGAT CGGGTCGATCGAGAAAGCCTACCTGGATGCCGGCGCCGATATTCTGGAGACCAACACGTTCAACGCCACCCAGGTTTCCCTGGCCGACTACGGCATGCAA GGCCTGGCATATGAGTTAAACGTAGAAGGCGCGCGCCTGGCACGCAAGGTGGCCGACGCAAAGACACTGGAAACGCCGGACAAGCCGCGCTTCGTCGCTG GCGTGATCGGGCCGACCAGCCGCACCTGCTCGCTGTCACCGGACGTGAACAACCCCGGCTACCGCAACGTGACCTTCGATGAATTGGTGGAAAACTACAC CGAGGCCACCAAAGGCCTGATCGAAGGCGGCGCCGACCTGATCCTGATCGAAACCATTTTCGACACGCTGAACGCCAAAGCCGCGATCTTCGCCGTGCAG GGTGTGTTTGAAGAGTTGGGTATCGAACTGCCGATCATGATTTCCGGCACCATTACCGACGCCTCCGGCCGAACCCTGTCCGGCCAGACCACCGAAGCGT TCTGGAACTCGGTCGCCCACGCCAAGCCGATCTCGGTCGGCCTGAACTGCGCCCTCGGTGCCAAAGAATTGCGCCCGTACCTGGAAGAACTGTCAAACAA GGCTGGCACCCACGTTTCGGCACACCCGAACGCCGGCCTGCCGAACGAATTCGGCGAGTACGATGAGCTGCCAGCGGAAACCGCCAAGGTCATCGAAGAA TTCGCCCAGAGCGGTTTCCTCAACATCGTCGGCGGCTGCTGCGGCACCACGCCAGGCCACATCGAAGCCATCGCCAAAGCCGTGGCCGGTTATGCACCAC GTGTCATTCCGGAAATCCCGAAGGCTTGCCGCCTCTCGGGCCTGGAGCCGTTCACCATCGATCGCAGTTCGCTGTTCGTCAACGTCGGCGAGCGCACCAA CATCACCGGCTCGGCGAAATTCGCCCGCCTGATCCGTGAAGACAACTACACCGAAGCGCTGGAAGTGGCCCTGCAACAGGTTGAAGCCGGTGCCCAGATC ATCGACATCAACATGGATGAAGGGATGCTCGATTCGAAGAAGGCCATGGTGACCTTCCTCAATCTGATTGCCGGTGAACCGGACATCTCCCGTGTGCCGA TCATGATCGACTCCTCGAAGTGGGAAGTGATCGAAGCCGGCCTCAAGTGCATTCAGGGCAAGGGCATCGTCAACTCGATCAGCATGAAAGAAGGCGTCGA GCAGTTCATTCACCACGCCAAACTGTGCAAGCGCTATGGCGCCGCCGTGGTCGTGATGGCGTTCGACGAAGCCGGCCAGGCCGACACCGAAGCGCGCAAG AAAGAGATCTGCAAACGCTCCTACGACATTCTGGTCAACGAAGTCGGCTTCCCGCCGGAAGACATCATTTTCGACCCGAACATCTTCGCCGTGGCCACCG GCATCGAAGAACACAACAACTACGCTGTGGACTTCATCAACGCCTGCGCCTACATCCGCGACGAACTGCCCTACGCGCTGACCTCGGGCGGCGTGTCCAA CGTGTCGTTCTCGTTCCGCGGCAACAACCCGGTGCGCGAGGCGATTCACTCGGTGTTCCTGCTGTATGCGATCCGCAACGGCCTGACCATGGGTATCGTC AACGCCGGTCAGCTGGAGATCTACGACCAGATCCCGGCCGAGCTGCGCGACGCGGTCGAAGACGTGGTGCTCAACCGCACGCCGAACGGCACTGACGCCC TCCTCGCCATCGCCGACAAATACAAGGGCGACGGCAGCGTCAAGGAAGCCGAGACCGAAGAGTGGCGCAACTGGGACGTCAACAAGCGTCTGGAGCATGC GCTGGTCAAGGGCATCACCACGCACATCGTGGAAGACACCGAAGAATCGCGCCAGTCGTTCGCCCGCCCGATCGAAGTGATCGAAGGCCCGCTGATGTGC GGCATGAACATCGTGGGCGACCTCTTCGGCGCCGGCAAAATGTTCCTGCCGCAGGTGGTGAAATCCGCCCGTGTGATGAAACAGGCCGTGGCCCACTTGA TCCCGTTCATCGAACTGGAAAAAGGCGACAAGCCGGAAGCCAAGGGCAAGATCCTGATGGCCACGGTGAAAGGCGACGTGCACGACATCGGCAAGAACAT TGTCGGTGTGGTGCTCGGCTGTAACGGCTACGACATCGTCGACCTCGGCGTGATGGTCCCGGCGGAGAAGATCCTGCAAGTGGCCAAGGAGCAGAAGTGC GACATCATCGGCCTGTCCGGTCTGATCACGCCTTCACTGGATGAAATGGTCCACGTGGCCCGCGAGATGCAGCGTCAGGATTTCCATCTGCCGCTGATGA TCGGTGGCGCGACCACCTCCAAGGCGCACACGGCGGTCAAGATCGAACCGAAGTACAGCAACGATGCGGTGATCTACGTCACCGACGCCTCCCGCGCCGT GGGCGTGGCGACGCAGTTGCTGTCCAAGGAGTTGAAACCGGCGTTCGTCGAAAAGACTCGCCTGGAATACATCGACGTTCGCGAGCGCACCGCCAATCGC AGCGCCCGCACCGAACGCCTGAGCTACCCGGCCGCCATCGCCAAGAAGCCGCAGTTCGACTGGAGCACTTATGTGCCGGTCAAACCGACCTTTACCGGTT CCAGGGTGCTGGACAACATCGACCTCAAGGTTCTGGCCGAATACATCGACTGGACGCCGTTCTTTATCTCCTGGGACCTGGCCGGCAAGTTCCCGCGCAT CCTCCAGGACGAAGTGGTCGGTGAAGCCGCTACCGCGTTGTATGCCGATGCTCAGGAAATGCTCGCCAAGCTGATCGACGAGAAACTCATCAGCGCCCGT GCGGTGTTCGGCTTCTGGCCGGCCAACCAGGTGCGTGAAGATGACATCGAAGTCTACGGCGATGACGGCAAGCCGATTGCCAAGCTGCATCACTTGCGCC AGCAGATCATCAAGACCGATGGCAAGCCGAACTTCTCCCTCGCCGACTTCGTCGCGCCGAAGGACAGCGAAATCACCGACTACGTGGGTGGATTCATCAC CACGGCCGGGATCGGCGCCGAAGAAGTGGCCAAGGCTTATCAAGACGCCGGCGATGATTACAACTCGATCATGGTCAAGGCACTGGCCGACCGACTGGCC GAGGCGTGTGCCGAGTGGCTGCACCAGCAGGTGCGGAAAGAACACTGGGGTTACGCCAAGGACGAGACGCTCGACAACGAGGCGCTGATCAAAGAGCAAT ACACCGGCATCCGCCCTGCCCCGGGCTACCCGGCCTGCCCGGATCACACCGAGAAAAGCACCCTGTTTGCCTTGCTCGACCCCGAGGCCAGCGAAATGCA GGCCGGCCGCAGCGGCGTGTTCCTCACCGAGCACTACGCAATGTTCCCGGCGGCAGCGGTCAGCGGCTGGTACTTCGCTCATCCGCAGGCGCAATATTTT GCGGTGGGCAAAATCGACAAAGACCAGGTGCAGAGCTACACATCGCGCAAAGGGCAGGAACTGAGCGTGACCGAACGCTGGCTGGCGCCGAACCTCGGTT ACGACAACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCAGGCATCTGGCCACAATATTGTGGCCAGATGAGCCCCCTGTGGGAGCGAGCCTGCTCGCGAAGGCGTTATAACGTTCAACGAAGATGTTGAATGTTA TGGCCAATTCGCTAGCAGGCTAGCTCCCACAGTTGTTTTGGGTCGTTCACAAACGTGTGGATCAACCCGATCAAGTGTGGGAGCGAGCCTGCTCGCGATG GCGTTATAACGTTCAACGAAGATGTTGAATGTTATGGCCACTTCGCTAGCAGGCTAGCTCCCACAGTTGTTTTGGGTCGTTCACAAACGTGTGGATCAAC CCGATCAAGTGTGGGAGCGAGCCTGCTCGCGAAGGCGTTATAACGTTCAACGAAGATGTTGAATGCTATGGCCAATTCGCTAGCAGGCTAGCTCCCACAG TTGTTTTGGGTCGTTCACAAACGTGTGGAACAACCCGATCAAGTGTGGGAGCGAGCCTGCTCGCGATAGCGATGTGACAGTCAACGAAGATGTTGAATGT
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| Amino Acid Sequence |
>B12-dependent methionine synthase
MSDRSVRLQALKHALKERILILDGGMGTMIQSYKLEEQDYRGKRFADWPSDVKGNNDLLVLTRPDVIGSIEKAYLDAGADILETNTFNATQVSLADYGMQ GLAYELNVEGARLARKVADAKTLETPDKPRFVAGVIGPTSRTCSLSPDVNNPGYRNVTFDELVENYTEATKGLIEGGADLILIETIFDTLNAKAAIFAVQ GVFEELGIELPIMISGTITDASGRTLSGQTTEAFWNSVAHAKPISVGLNCALGAKELRPYLEELSNKAGTHVSAHPNAGLPNEFGEYDELPAETAKVIEE FAQSGFLNIVGGCCGTTPGHIEAIAKAVAGYAPRVIPEIPKACRLSGLEPFTIDRSSLFVNVGERTNITGSAKFARLIREDNYTEALEVALQQVEAGAQI IDINMDEGMLDSKKAMVTFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFIHHAKLCKRYGAAVVVMAFDEAGQADTEARK KEICKRSYDILVNEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFINACAYIRDELPYALTSGGVSNVSFSFRGNNPVREAIHSVFLLYAIRNGLTMGIV NAGQLEIYDQIPAELRDAVEDVVLNRTPNGTDALLAIADKYKGDGSVKEAETEEWRNWDVNKRLEHALVKGITTHIVEDTEESRQSFARPIEVIEGPLMC GMNIVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIELEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQVAKEQKC DIIGLSGLITPSLDEMVHVAREMQRQDFHLPLMIGGATTSKAHTAVKIEPKYSNDAVIYVTDASRAVGVATQLLSKELKPAFVEKTRLEYIDVRERTANR SARTERLSYPAAIAKKPQFDWSTYVPVKPTFTGSRVLDNIDLKVLAEYIDWTPFFISWDLAGKFPRILQDEVVGEAATALYADAQEMLAKLIDEKLISAR AVFGFWPANQVREDDIEVYGDDGKPIAKLHHLRQQIIKTDGKPNFSLADFVAPKDSEITDYVGGFITTAGIGAEEVAKAYQDAGDDYNSIMVKALADRLA EACAEWLHQQVRKEHWGYAKDETLDNEALIKEQYTGIRPAPGYPACPDHTEKSTLFALLDPEASEMQAGRSGVFLTEHYAMFPAAAVSGWYFAHPQAQYF AVGKIDKDQVQSYTSRKGQELSVTERWLAPNLGYDN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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