Pseudomonas putida NBRC 14164, PP4_14250 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NBRC 14164 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGAAATCGGCGACAACCTCGACGTGCTGGTGATCGACACTGCGGCGGGGATTGGCGAGTCAGTGGTCAGCTTCGTTCGCGCCGCCCAGGAAGTGC TGCTGGTGGTCTGTGACGAGCCCACCTCGATCACCGATGCCTACGCCCTGATCAAACTGCTCAACCGCGACTACGGGATGAATCGTTTCCGTGTGCTGGC CAACATGGCGCAGAGCCCGCAGGAAGGGCGCAACCTGTTCGCCAAGCTGACCAAGGTCACCGACCGCTTCCTCGACGTTGCCCTGCAGTACGTGGGCGCC GTGCCGTACGACGAGTGTGTGCGCAAGGCAGTGCAGAAGCAGCGCGCCGTCTACGAAGCCTTCCCACGCTCCAAGTGCGCGCTGGCTTTCAAGGCGATCG CCCAGAAGTTCGACAGCTGGCCGCTGCCGGCCAATCCGCGCGGCCATCTGGAGTTCTTTGTCGAGCGTCTGGTGCAACCCACCAGCGCGGGACCCGTGCT
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| DNA Sequence for Gene |
>PP4_14250
|fliA
ATGAACGCCAGCGGCTTCAAGATGTACAGCCGGGCGGCGAAAGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTGAAGCGCATTGCCTACC ACCTGTTGGCGCGTTTACCGGCCAACGTGCAGGTCGAGGACCTGATCCAGGCCGGCATGATCGGCCTGCTTGAAGTGTCCAGCAAATATGACGCCAGCAA AGGCGCCAGCTTTGAAACCTATGCCGGCATCCGCATCCGCGGGGCCATGCTGGACGAGGTGCGCAAGGGCGACTGGGCACCGCGTTCGGTGCACCGCAAC ACCCGCATGGTAAGTGACGCGATGCGTGCCGTTGAAGCCAGAACAGGCCGGGACGCTAAAGATCATGAAGTTGCTGCCGAACTCCAATTGAGTCTCGATG ATTACTACGGGATCTTGAACGATACCTTGGGCAGCCGTCTGTTCAGCTTTGACGACCTGTTGCAGGACGGCGAGCACGAAGGGCTGCATGAGGATGGCGC CAGTGGCCATGTCGAACCTGCGCGTGGCCTGGAGGACGAACGCTTCCAGGCTGCCCTGACCGAGGCCATTGCCAACCTGCCGGAGCGTGAGCGCCTGGTG CTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGCGAGGTGCTTGGGGTCAGCGAGTCGCGGGTCAGCCAGTTGCACAGCCAGTGCGCCG CGCGCCTGCGTAGCCGCCTGGGGGAATGGCGGGCACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGGTGTCGTTGCAGTCGTTTTCCACGTGCGTTATCCACGTTGTACCGAATTGAATGAGTGCGTGCCCGGTAGACCGGGCGCGTTTGAGACTGCTTGG AGGTCTAATTGGACAAGAACATGAAAATCCTCATCGTTGACGACTTTTCGACGATGCGGCGGATCATCAAGAACCTGTTGCGTGACCTGGGCTTCACCAA CACCGAAGAAGCCGACGATGGCACCACGGCGCTGCCGATGCTGGAAAACGGCCACTACGACTTCCTGGTGACCGACTGGAACATGCCCGGCATGTCCGGC ATCGACCTGCTGCGTAAAGTGCGTGCCAGTGAAAAGCTGAAAACCATGCCGGTACTGATGGTGACTGCCGAGGCCAAGCGCGACCAGATCATCGAAGCGG CCCAGGCCGGCGTCAATGGCTATGTGGTCAAGCCGTTCACCGCTCAGGTGCTCAAAGAAAAGATCGAGAAGATCTTCGAACGCGTCAACGGCTGAGTCAC
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| Amino Acid Sequence |
>RNA polymerase sigma-28 factor
MNASGFKMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVSSKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGHVEPARGLEDERFQAALTEAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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