Pseudomonas putida NBRC 14164, PP4_14250 (fliA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppun02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppun02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	20	92	9.9E-18
PIRSF	PIRSF000770	SigK_SigE	IPR000943	RNA polymerase sigma-70	3	244	3.4E-34
CDD	cd06171	Sigma70_r4	-	-	183	237	6.2991E-13
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	210	225	8.8E-11
SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	IPR013325	RNA polymerase sigma factor, region 2	13	92	3.92E-24
Gene3D	G3DSA:1.20.140.160	-	-	-	91	242	3.4E-42
PANTHER	PTHR30385	SIGMA FACTOR F FLAGELLAR	-	-	10	244	3.8E-49
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	101	168	7.9E-11
FunFam	G3DSA:1.10.1740.10:FF:000002	RNA polymerase sigma factor FliA	-	-	6	89	1.0E-40
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	94	162	2.22E-12
Hamap	MF_00962	RNA polymerase sigma factor FliA [fliA].	IPR028617	RNA polymerase sigma factor FliA	6	243	66.13018
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	47	60	8.8E-11
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	193	205	8.8E-11
Gene3D	G3DSA:1.10.1740.10	-	-	-	7	89	1.8E-23
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	166	243	1.66E-20
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	189	237	2.0E-18
FunFam	G3DSA:1.20.140.160:FF:000001	RNA polymerase sigma factor FliA	-	-	91	242	9.8E-77
NCBIfam	TIGR02937	JCVI: sigma-70 family RNA polymerase sigma factor	IPR014284	RNA polymerase sigma-70 like domain	16	240	1.3E-33
NCBIfam	TIGR02479	JCVI: FliA/WhiG family RNA polymerase sigma factor	IPR012845	RNA polymerase sigma factor, FliA/WhiG	20	240	5.0E-82
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	225	236	8.8E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.