Pseudomonas protegens CHA0, PFLCHA0_c47070 (ada3)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00478
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 120 285 4.17875E-25
Pfam PF06029 AlkA N-terminal domain IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 4 118 1.3E-35
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 239 289 1.2E-10
Gene3D G3DSA:3.30.310.20 - IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily 2 118 3.1E-35
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 124 276 1.4E-10
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 119 236 5.5E-26
SMART SM01009 AlkA_N_2 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 4 118 2.8E-50
PANTHER PTHR43003 DNA-3-METHYLADENINE GLYCOSYLASE - - 70 287 6.7E-34
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 108 286 4.89E-40
SMART SM00478 endo3end IPR003265 HhH-GPD domain 128 289 3.0E-17
SUPERFAMILY SSF55945 TATA-box binding protein-like - - 4 99 2.51E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.