Pseudomonas protegens CHA0, PFLCHA0_c13660 (arpC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01845 JCVI: efflux transporter outer membrane subunit IPR010131 RND efflux system, outer membrane lipoprotein, NodT 10 465 0.0
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 65 255 2.2E-25
Gene3D G3DSA:2.20.200.10 Outer membrane efflux proteins (OEP) - - 102 354 0.0
SUPERFAMILY SSF56954 Outer membrane efflux proteins (OEP) - - 3 467 1.11E-117
PANTHER PTHR30203 OUTER MEMBRANE CATION EFFLUX PROTEIN - - 4 469 7.6E-106
Gene3D G3DSA:1.20.1600.10 Outer membrane efflux proteins (OEP) - - 56 465 0.0
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 281 463 2.2E-29
Coils Coil Coil - - 229 249 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.