Pseudomonas protegens CHA0, PFLCHA0_c13660 (arpC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGTTCCTGTGTCTGGCAGCGCTGTATGAAAGCTGGTCGATTCCGATCGCAGTGATGCTGGTTGTGCCCCTGGGGATCATCGGTGCACTGATGGCAACCA GCATGCGCGGCCTGTCCAACGACGTGTACTTCCAGGTAGGCCTGTTGGTGACCATTGGTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAA GGAACTGCACGAGCAGGGCCGCAGCCTGGTAGACGCCGCGGTGGAAGCCTGCCGGATGCGTCTGCGGCCGATCATCATGACCTCCCTGGCCTTCGTCCTC GGGGTCGTGCCACTGGCCATCTCCACGGGCGCCGGCTCGGGTAGCCAGCATGCGATCGGTACTGGGGTGATCGGCGGTATGCTCACCGCGACTATCCTGG CGATCTTCTGGGTGCCATTGTTCTTCGTCACCGTATCGTCCATGGGCCGCAGGAAAGCGGACCTGTCAGAAACTACTGCAACCCCTAATGAGGCTGGCCA
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| DNA Sequence for Gene |
>PFLCHA0_c13660
|arpC
ATGAGCAAGTCGCTACTCTCCCTGGCAATCACCGCCATCGCGCTAAGTGGTTGCTCGCTGATCCCGGATTACCAGCGCCCGGAAGCGCCGGTGGCGGCGC AGTTCCCCCAAGGCCCTGCCTACTCGCCAAAGGAGGCCGCCAACGTGGCGGCCGCCGAACAGGGCTGGCGGCAGTTCTTCCATGACCCGGCGCTGCAGCA ACTGATCCAGACGTCCCTGGAAAACAACCGCGACCTCAAGGTCGCGGCGTTGAACATCGATGCCTATGCCGCGCAGTACCAGATCCAGCGTGCGGACCTG TTCCCAGCGGTTTCGGCCAACGGCAGCGGCAGCCGGCAACGACTGCCAGCCCGGGCCTCGAGCACCGGCAAGGAGATGATCTCCAGCCAGTACTCGGCCA CCGTGGGCGTCAGCGCCTATGAACTGGACCTGTTCGGCCGCGTTCGCAGCCTGAGCGAGCAGGCCTTGCAGACCTACTTCTCCAGCGAAGAAGCCCGGCG CAGCACCCAGATCAGCCTGGTAGCCAGCGTGGCCAACGCCTACATGACCTGGCAGGCCGACAAGGAACTGCTGAAGCTGACCCAGGACACCCTCGCCGCC TACGAGGAAAGCTACCGGCTGACCTCGCGCAGCAACGAAGTGGGCGTGGCCTCGGCCCTGGACCTGAGCCAGTCGCGGACTTCGGTGGAAAACGCCCGGG TCCAGCTGGCGCGCTACACCCGCCAGGTGGCCCAGGATGAAAACAGCCTGACCCTGCTGCTGGGCACGGCGATTCCGGCCAACCTGCCGGCGGCCCAACC GCTCTCGGCCGACCTGCTGAGCGACCTGCCAGCCGGCCTGCCGTCGGAACTGCTGCAACGGCGTCCGGACATTCTCGAAGCCGAGTACAAGCTCAAGGCG GCCAATGCCAATATCGGTGCGGCGCGGGCAGCGTTCTTCCCGAGCATCAGCCTGACCGCCAATGCCGGTACCTTGAGCCCGGATCTCTCGGGCCTGTTCA AGGGGGGCTCGGGCACCTGGCTGTTCCAGCCGCAGATCAACCTGCCGATCTTCAACGCCGGCAGCCTGCGCGCCAGCCTGGACTACTCGAAAATCCAGAA AGACATCACCGTCGCGCAGTACGAGAAATCCATCCAGACCGCCTTCCAGGAAGTCTCCGATGGCCTGGCGGCACGCCAGACCTACAACCAGCAGCTGCAG GCCCAGCGTGATTTCGTCAACGCCAACCAGGACTACTATCGTCTGGCCGAGCGCCGCTACCGTATCGGGGTCGACAGCAACCTGACCTTCCTCGATGCCC AGCGGTCGCTGTTCAGCGCCCAGCAGGCACTGATCACCGATCGCCTGTCGCAGCTCACCAGCGAGGTCAACCTGTACAAGGCCCTCGGCGGTGGCTGGAG CGAACAGACAGCGAAGAACGAGCCACTGGCGGAAAAAGCCCCGGCGCTGCACCTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGTCACCTGGCCATATGAAAAACCCACCTGACGGTGGGTTTTTTTATATGTACCAACTGGAACATTTGTGTTCGATTACCGCCCAAAAAGTGTTTCGT CCAATTGATTGGCCCTGATCCGCGACGCACCATTCCCGGCACCTGGACACACCAATAACAACAGGTCCGATGCCATGCCCCCACGCCCTGCCCGCTGCGG CTGATACCTCCGGTTCCACCCTGCTCCCCTGAAACCTGTGCCCAGACCCTTTGCGCGGCACTGGCCGGCTGCACCCCTAACAATTAGAGAGACCGACGAA TGAAGCCAAGCACCCCGCCGTCCTACCTTCTGCCCAGCCTCATGGCCCTGGCGCTGAGCAGCCCCGCCCTGCCGGCACTGGCTGCAGAGTCGGGCTTTCT CGAAGATGCCCAGGCCAACCTGACCCTGCGCAACTTCTATTTCAACCGCAACTTCACCAACCCGACCAAGGCCCAGGGCAAGGCCGAGGAATGGACCCAG
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| Amino Acid Sequence |
>antibiotic efflux pump outer membrane protein ArpC
MSKSLLSLAITAIALSGCSLIPDYQRPEAPVAAQFPQGPAYSPKEAANVAAAEQGWRQFFHDPALQQLIQTSLENNRDLKVAALNIDAYAAQYQIQRADL FPAVSANGSGSRQRLPARASSTGKEMISSQYSATVGVSAYELDLFGRVRSLSEQALQTYFSSEEARRSTQISLVASVANAYMTWQADKELLKLTQDTLAA YEESYRLTSRSNEVGVASALDLSQSRTSVENARVQLARYTRQVAQDENSLTLLLGTAIPANLPAAQPLSADLLSDLPAGLPSELLQRRPDILEAEYKLKA ANANIGAARAAFFPSISLTANAGTLSPDLSGLFKGGSGTWLFQPQINLPIFNAGSLRASLDYSKIQKDITVAQYEKSIQTAFQEVSDGLAARQTYNQQLQ AQRDFVNANQDYYRLAERRYRIGVDSNLTFLDAQRSLFSAQQALITDRLSQLTSEVNLYKALGGGWSEQTAKNEPLAEKAPALHLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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