Pseudomonas protegens Pf-5, PFL_5997 (algQ)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF016548
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF04353 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | IPR007448 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | 1 | 141 | 3.5E-48 |
| Gene3D | G3DSA:1.20.120.1370 | Regulator of RNA polymerase sigma(70) subunit, domain 4 | IPR038309 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ superfamily | 1 | 150 | 1.3E-46 |
| PIRSF | PIRSF016548 | Rsd_AlgQ | IPR007448 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | 1 | 151 | 2.1E-58 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.