Pseudomonas protegens Pf-5, PFL_5448 (dacA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0009002	serine-type D-Ala-D-Ala carboxypeptidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00725	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006508	proteolysis	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00725	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004180	carboxypeptidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF69189	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pfl01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00550	Peptidoglycan biosynthesis	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF69189	Penicillin-binding protein associated domain	IPR015956	Penicillin-binding protein, C-terminal domain superfamily	275	367	1.55E-25
Gene3D	G3DSA:2.60.410.10	-	IPR037167	D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily	275	365	1.9E-27
PRINTS	PR00725	D-Ala-D-Ala carboxypeptidase 1 (S11) family signature	IPR018044	Peptidase S11, D-alanyl-D-alanine carboxypeptidase A	62	73	4.0E-16
SUPERFAMILY	SSF56601	beta-lactamase/transpeptidase-like	IPR012338	Beta-lactamase/transpeptidase-like	9	275	1.4E-89
Pfam	PF07943	Penicillin-binding protein 5, C-terminal domain	IPR012907	Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal	275	365	1.8E-24
PRINTS	PR00725	D-Ala-D-Ala carboxypeptidase 1 (S11) family signature	IPR018044	Peptidase S11, D-alanyl-D-alanine carboxypeptidase A	142	155	4.0E-16
SMART	SM00936	PBP5_C_2	IPR012907	Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal	275	365	5.3E-34
Pfam	PF00768	D-alanyl-D-alanine carboxypeptidase	IPR001967	Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal	28	255	3.4E-87
PRINTS	PR00725	D-Ala-D-Ala carboxypeptidase 1 (S11) family signature	IPR018044	Peptidase S11, D-alanyl-D-alanine carboxypeptidase A	115	132	4.0E-16
PANTHER	PTHR21581	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE	-	-	34	285	2.5E-45
Gene3D	G3DSA:3.40.710.10	-	IPR012338	Beta-lactamase/transpeptidase-like	24	274	8.6E-98

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.